Jatropha Genome Database

JcCB0005461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.10 - phase: 0 /pseudo/partial
         (496 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROT...   623   e-179

>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MSH1 (MUTL PROTEIN
           HOMOLOG 1); ATP binding / catalytic/ damaged DNA binding
           / mismatched DNA binding / nuclease |
           chr3:8823229-8829571 REVERSE
          Length = 1118

 Score =  623 bits (1607), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 309/489 (63%), Positives = 364/489 (74%), Gaps = 43/489 (8%)

Query: 1   MYWLVARNVVFALPKWRSLTLFLRSPACKYSSFSRSPSLLIAIAGLEFNCMILVIKSRRK 60
           M+W+  RN V + PKWR    F RS    YSS   S  +L+                 R+
Sbjct: 1   MHWIATRNAVVSFPKWR---FFFRSSYRTYSSLKPSSPILL----------------NRR 41

Query: 61  DVERVCCLKEQKNLKGNARVTKKSKASNNVLDDKDLSHIIWWKERLQQCRKPSTIQLVKR 120
             E + CL++ K+LK     +KK K S++VL DKDLSH++WWKERLQ C+KPST+QL++R
Sbjct: 42  YSEGISCLRDGKSLKRITTASKKVKTSSDVLTDKDLSHLVWWKERLQTCKKPSTLQLIER 101

Query: 121 LMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACFLVEY 180
           LMY+NLLGLD +L+NGSLK+GNLNWEMLQFKS+FPREVLLCRVG+FYEAIGIDAC LVEY
Sbjct: 102 LMYTNLLGLDPSLRNGSLKDGNLNWEMLQFKSRFPREVLLCRVGEFYEAIGIDACILVEY 161

Query: 181 AGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFISG 240
           AGLNPFGGLRSDSIP+AGCP++NLRQTLDDLTRNGYSVCIVEEVQGPT ARSRK RFISG
Sbjct: 162 AGLNPFGGLRSDSIPKAGCPIMNLRQTLDDLTRNGYSVCIVEEVQGPTPARSRKGRFISG 221

Query: 241 HAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCIVSVLEAMKTYSLEDGLTEEAL 300
           HAHPGSPYV+GLVGVDHDLDFP+PMPVVGISRSARGYC++S+ E MK YSL+DGLTEEAL
Sbjct: 222 HAHPGSPYVYGLVGVDHDLDFPDPMPVVGISRSARGYCMISIFETMKAYSLDDGLTEEAL 281

Query: 301 VAKLRTCRYHHLFLHTSLRNNSSGTCRXXXXXXXXXXXXXCSTRHFEWFQGNPVTELLFK 360
           V KLRT R HHLFLH SLR+N+SGTCR             CS+R+FEWF+G+ ++ELL +
Sbjct: 282 VTKLRTRRCHHLFLHASLRHNASGTCRWGEFGEGGLLWGECSSRNFEWFEGDTLSELLSR 341

Query: 361 VRELYGLENGVAFRNVTVPSENRPHSLHLGTATQIGQFNFTXTVXIEFFMXCQPILXQVF 420
           V+++YGL++ V+FRNV VPS+NRP  LHLGTATQIG                 P L +V 
Sbjct: 342 VKDVYGLDDEVSFRNVNVPSKNRPRPLHLGTATQIGALPTE----------GIPCLLKVL 391

Query: 421 HTLRCHTNRRNTLFIEGIASIKLLRYVRDLLLNPPAYEIASTIQAICKLMSNVTCSIPEF 480
               C           G+ S+    YVRDLLLNPPAY+IA  IQ  CKLMS VTCSIPEF
Sbjct: 392 LPSTC----------SGLPSL----YVRDLLLNPPAYDIALKIQETCKLMSTVTCSIPEF 437

Query: 481 TCVSSAKVV 489
           TCVSSAK+V
Sbjct: 438 TCVSSAKLV 446