Jatropha Genome Database
- JcCB0005311.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0005311.20 - phase: 0 /partial
(261 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G53090.2 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase | c... 377 e-105
AT3G53090.1 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase | c... 377 e-105
AT3G17205.2 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);... 189 1e-48
AT3G17205.1 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);... 189 2e-48
AT1G70320.1 | Symbols: UPL2 | UPL2 (UBIQUITIN-PROTEIN LIGASE 2);... 124 5e-29
AT1G55860.1 | Symbols: UPL1 | UPL1 (UBIQUITIN-PROTEIN LIGASE 1);... 120 1e-27
AT4G12570.1 | Symbols: UPL5 | UPL5 (UBIQUITIN PROTEIN LIGASE 5);... 88 6e-18
AT5G02880.1 | Symbols: UPL4 | UPL4; ubiquitin-protein ligase | c... 64 1e-10
AT4G38600.1 | Symbols: KAK, UPL3 | KAK (KAKTUS); ubiquitin-prote... 56 2e-08
AT4G38600.2 | Symbols: KAK, UPL3 | KAK (KAKTUS); ubiquitin-prote... 50 1e-06
>AT3G53090.2 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase |
chr3:19679273-19684453 FORWARD
Length = 1142
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/261 (69%), Positives = 202/261 (77%), Gaps = 41/261 (15%)
Query: 1 HYDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILP 60
HYDGD K+L LDFTVTEE GK + ELKPGGKD VTNENKMQY+HAMADYKLNRQI+P
Sbjct: 923 HYDGDLKELCLDFTVTEEFCGKMSIIELKPGGKDTSVTNENKMQYIHAMADYKLNRQIVP 982
Query: 61 FSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIK 120
FSNAFYRGLTD+ISP+WLKLFNA EFNQLLSGG+ DIDVDDLR NT+YTGGYS+ SRTIK
Sbjct: 983 FSNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIK 1042
Query: 121 LFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVD 180
+FWEV++GF+P+ERCLLLKFVTSCSRAPLLGFK+LQP+F IHKV+CD SLWA IGGQDV+
Sbjct: 1043 IFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVE 1102
Query: 181 RLPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKR 240
RLPSASTCYNTLK LPTYKR
Sbjct: 1103 RLPSASTCYNTLK-----------------------------------------LPTYKR 1121
Query: 241 ASTLRAKLLYAISSNTGFELS 261
AST+R KLLYAI+SN GFELS
Sbjct: 1122 ASTMREKLLYAITSNAGFELS 1142
>AT3G53090.1 | Symbols: UPL7 | UPL7; ubiquitin-protein ligase |
chr3:19679273-19684453 FORWARD
Length = 1142
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/261 (69%), Positives = 202/261 (77%), Gaps = 41/261 (15%)
Query: 1 HYDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILP 60
HYDGD K+L LDFTVTEE GK + ELKPGGKD VTNENKMQY+HAMADYKLNRQI+P
Sbjct: 923 HYDGDLKELCLDFTVTEEFCGKMSIIELKPGGKDTSVTNENKMQYIHAMADYKLNRQIVP 982
Query: 61 FSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIK 120
FSNAFYRGLTD+ISP+WLKLFNA EFNQLLSGG+ DIDVDDLR NT+YTGGYS+ SRTIK
Sbjct: 983 FSNAFYRGLTDLISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIK 1042
Query: 121 LFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVD 180
+FWEV++GF+P+ERCLLLKFVTSCSRAPLLGFK+LQP+F IHKV+CD SLWA IGGQDV+
Sbjct: 1043 IFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVE 1102
Query: 181 RLPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKR 240
RLPSASTCYNTLK LPTYKR
Sbjct: 1103 RLPSASTCYNTLK-----------------------------------------LPTYKR 1121
Query: 241 ASTLRAKLLYAISSNTGFELS 261
AST+R KLLYAI+SN GFELS
Sbjct: 1122 ASTMREKLLYAITSNAGFELS 1142
>AT3G17205.2 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);
ubiquitin-protein ligase | chr3:5873528-5881132 FORWARD
Length = 1015
Score = 189 bits (480), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 137/260 (52%), Gaps = 47/260 (18%)
Query: 2 YDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPF 61
Y GD DL L F + +G+R EL PGG+D+ VTNEN + ++H +++++LN QI
Sbjct: 803 YKGDISDLELYFVILNNEYGERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQ 862
Query: 62 SNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKL 121
S+ F RG +I W+ +FN E L+SG +D+DDLRNNT Y GGY G I +
Sbjct: 863 SSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDM 922
Query: 122 FWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVDR 181
FWEV++ F + LKFVT CSR PLLGFK+L+P+F I + A AS + VDR
Sbjct: 923 FWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSAS------NESVDR 976
Query: 182 LPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKRA 241
LP+++TC N LK LP Y+
Sbjct: 977 LPTSATCMNLLK-----------------------------------------LPPYQSK 995
Query: 242 STLRAKLLYAISSNTGFELS 261
L KL+YAIS+ GF+LS
Sbjct: 996 ELLETKLMYAISAEAGFDLS 1015
>AT3G17205.1 | Symbols: UPL6 | UPL6 (UBIQUITIN PROTEIN LIGASE 6);
ubiquitin-protein ligase | chr3:5873528-5881132 FORWARD
Length = 1029
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 137/260 (52%), Gaps = 47/260 (18%)
Query: 2 YDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPF 61
Y GD DL L F + +G+R EL PGG+D+ VTNEN + ++H +++++LN QI
Sbjct: 817 YKGDISDLELYFVILNNEYGERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQ 876
Query: 62 SNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKL 121
S+ F RG +I W+ +FN E L+SG +D+DDLRNNT Y GGY G I +
Sbjct: 877 SSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDM 936
Query: 122 FWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVDR 181
FWEV++ F + LKFVT CSR PLLGFK+L+P+F I + A AS + VDR
Sbjct: 937 FWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQRAAGSAS------NESVDR 990
Query: 182 LPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKRA 241
LP+++TC N LK LP Y+
Sbjct: 991 LPTSATCMNLLK-----------------------------------------LPPYQSK 1009
Query: 242 STLRAKLLYAISSNTGFELS 261
L KL+YAIS+ GF+LS
Sbjct: 1010 ELLETKLMYAISAEAGFDLS 1029
>AT1G70320.1 | Symbols: UPL2 | UPL2 (UBIQUITIN-PROTEIN LIGASE 2);
ubiquitin-protein ligase | chr1:26488745-26501281 REVERSE
Length = 3658
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 108/204 (52%), Gaps = 28/204 (13%)
Query: 3 DGDFKDLSLDFTVTEESFGKRHV---------FELKPGGKDVCVTNENKMQYVHAMADYK 53
+ D D+ LD T + ++ ++H+ +ELKPGG+++ VT E K +YV +AD+
Sbjct: 3440 ENDVSDI-LDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVADHI 3498
Query: 54 LNRQILPFSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYS 113
L I P NAF GL ++I + +FN E L+SG +ID DDL+ NT YT Y+
Sbjct: 3499 LTSAIRPQINAFLEGLNELIPRELVSIFNDKELELLISGLP-EIDFDDLKANTEYT-SYT 3556
Query: 114 EGSRTIKLFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDA 168
GS I+ FWEV++ F + L+FVT S+ PL GFK LQ IHK
Sbjct: 3557 VGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGSP 3616
Query: 169 SLWATIGGQDVDRLPSASTCYNTL 192
+RLPSA TC+N L
Sbjct: 3617 -----------ERLPSAHTCFNQL 3629
>AT1G55860.1 | Symbols: UPL1 | UPL1 (UBIQUITIN-PROTEIN LIGASE 1);
ubiquitin-protein ligase | chr1:20879900-20895393 REVERSE
Length = 3891
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 106/199 (53%), Gaps = 18/199 (9%)
Query: 3 DGDFKDLSLDFTVTEESFGKRHV---------FELKPGGKDVCVTNENKMQYVHAMADYK 53
+ D D+ LD T + ++ ++H+ +ELKPGG+++ VT E K +YV +A +
Sbjct: 3673 ENDVSDI-LDLTFSMDADEEKHILYEKTEVTDYELKPGGRNIRVTEETKHEYVDLVAGHI 3731
Query: 54 LNRQILPFSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYS 113
L I P NAF G ++I + +FN E L+SG +ID DDL+ NT YT Y+
Sbjct: 3732 LTNAIRPQINAFLEGFNELIPRELVSIFNDKELELLISGLP-EIDFDDLKANTEYT-SYT 3789
Query: 114 EGSRTIKLFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWAT 173
GS I FWEV++ F + L+FVT S+ PL GFK LQ ++ + A
Sbjct: 3790 AGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVPLEGFKALQGISGPQRLQIHKAYGAP 3849
Query: 174 IGGQDVDRLPSASTCYNTL 192
+RLPSA TC+N L
Sbjct: 3850 ------ERLPSAHTCFNQL 3862
>AT4G12570.1 | Symbols: UPL5 | UPL5 (UBIQUITIN PROTEIN LIGASE 5);
acid-amino acid ligase/ binding / ubiquitin-protein
ligase | chr4:7445585-7448819 FORWARD
Length = 873
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 17/189 (8%)
Query: 9 LSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRG 68
L L F + E GKR EL P GK V ++N+ QYV + + + IL F RG
Sbjct: 667 LGLTFVLETEELGKRDTIELCPDGKLKAVNSKNRKQYVDLLIERRFATPILEQVKQFSRG 726
Query: 69 LTDVIS-----PSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFW 123
TD++S S+ K + + +L GG+ I +DD + +T Y G+ E R I FW
Sbjct: 727 FTDMLSHSVPPRSFFKRLYLEDLDGMLRGGENPISIDDWKAHTEY-NGFKETDRQIDWFW 785
Query: 124 EVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVDRLP 183
++++ E+ +L F TS P+ GF+ L I+++ + DRLP
Sbjct: 786 KILKKMTEEEQRSILFFWTSNKFVPVEGFRGLSSKLYIYRLY-----------EANDRLP 834
Query: 184 SASTCYNTL 192
+ TC+ L
Sbjct: 835 LSHTCFYRL 843
>AT5G02880.1 | Symbols: UPL4 | UPL4; ubiquitin-protein ligase |
chr5:662643-668847 FORWARD
Length = 1502
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 52/238 (21%)
Query: 26 FELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAFYRGLTDVISPSWLKLFNAME 85
++L P + V +N +Y+ + + + I AF G V S L++FN E
Sbjct: 1315 YDLAPYSANDMVNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEE 1374
Query: 86 FNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEVIRGFQPNERCLLLKFVTSCS 145
+L G ++++ ++ ++ GY+ S ++ +++ F ++ L+FVT
Sbjct: 1375 LETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSP 1434
Query: 146 RAPLLGFKHLQPSFTI-HKVACDASLWATIGGQDVDRLPSASTCYNTLKVFLMQGTMTPR 204
R P G L P TI K D+S D D LPS TC N
Sbjct: 1435 RLPHGGLASLSPKLTIVRKHGSDSS--------DTD-LPSVMTCAN-------------- 1471
Query: 205 IFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPTYKRASTLRAKLLYAISSNTG-FELS 261
+L+LP Y ++ KL+YAI+ G F LS
Sbjct: 1472 ---------------------------YLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502
>AT4G38600.1 | Symbols: KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein
ligase | chr4:18041503-18049292 REVERSE
Length = 1888
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 11/193 (5%)
Query: 6 FKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAF 65
+DLSL+FT+ + L+ G + V +TN +Y+ + D + R + AF
Sbjct: 1676 IEDLSLEFTLP-----GYPEYILRSGDEIVDITNLE--EYISLVVDATVKRGVTRQIEAF 1728
Query: 66 YRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEV 125
G V + L++F E + LL G +V+ L + ++ GY+ S I E+
Sbjct: 1729 RSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEI 1788
Query: 126 IRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTI---HKVACDASLWATIGGQDV-DR 181
+ +++ +FVT R P G L P TI H A+ + D
Sbjct: 1789 MGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTSSAAANGAGASETADDD 1848
Query: 182 LPSASTCYNTLKV 194
LPS TC N LK+
Sbjct: 1849 LPSVMTCANYLKL 1861
>AT4G38600.2 | Symbols: KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein
ligase | chr4:18041503-18049073 REVERSE
Length = 1794
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 14/193 (7%)
Query: 6 FKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAF 65
+DLSL+FT+ + L+ G + V +TN +Y+ + D + R + AF
Sbjct: 1585 IEDLSLEFTLP-----GYPEYILRSGDEIVDITNLE--EYISLVVDATVKRGVTRQIEAF 1637
Query: 66 YRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEV 125
G V + L++F E + LL G +V+ L + ++ GY+ S I
Sbjct: 1638 RSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINIMGE 1697
Query: 126 IRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTI---HKVACDASLWATIGGQDVDR- 181
+ Q C +FVT R P G L P TI H A+ + D
Sbjct: 1698 LTADQQRAFC---QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTSSAAANGAGASETADDD 1754
Query: 182 LPSASTCYNTLKV 194
LPS TC N LK+
Sbjct: 1755 LPSVMTCANYLKL 1767