Jatropha Genome Database

JcCB0004891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.20 + phase: 0 
         (244 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    91   7e-19
AT3G25710.1 | Symbols: BHLH32, ATAIG1 | BHLH32 (BASIC HELIX-LOOP...    88   6e-18
AT4G38070.1 | Symbols:  | bHLH family protein | chr4:17876535-17...    84   6e-17
AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    82   3e-16
AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    79   2e-15
AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    77   8e-15

>AT3G56770.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:21029202-21030618 REVERSE
          Length = 230

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 22/148 (14%)

Query: 44  EKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAA 103
           E K+  + ++HKEAER+RR RIN+H              DK++LLA+VV  VKEL++Q  
Sbjct: 39  EDKALASLRNHKEAERKRRARINSHLNKLRKLLSCNSKTDKSTLLAKVVQRVKELKQQTL 98

Query: 104 HVARQDRDSCCGSESESEKYWPFPGESDE-TILSYCD---GETK--TMRVSVCCEDRPGL 157
            +  +                  P E+DE ++L+  D   G+ +    +VS CCEDRP L
Sbjct: 99  EITDE----------------TIPSETDEISVLNIEDCSRGDDRRIIFKVSFCCEDRPEL 142

Query: 158 NRDLSQAIRSVKARAVKAEMMTVGGRTR 185
            +DL + ++S++   + A+M TVGGRTR
Sbjct: 143 LKDLMETLKSLQMETLFADMTTVGGRTR 170


>AT3G25710.1 | Symbols: BHLH32, ATAIG1 | BHLH32 (BASIC
           HELIX-LOOP-HELIX 32); DNA binding / transcription factor
           | chr3:9369598-9371096 FORWARD
          Length = 344

 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 92/187 (49%), Gaps = 25/187 (13%)

Query: 9   GFDHSQNRF-VQEPTLVNVME------MDGAGESVLSSSSRLEKKSTEACKSHKEAERRR 61
             DH QN   +    L  +M        DG     LS+   ++ K+  A KSH EAERRR
Sbjct: 84  SMDHPQNHLRILSEALGPIMRRGSSFGFDGEIMGKLSAQEVMDAKALAASKSHSEAERRR 143

Query: 62  RQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAAHVARQDRDSCCGSESESE 121
           R+RIN H              DKASLLAEV+ H+KEL++Q + +                
Sbjct: 144 RERINTHLAKLRSILPNTTKTDKASLLAEVIQHMKELKRQTSQITDT------------- 190

Query: 122 KYWPFPGESDETIL--SYCDGETK-TMRVSVCCEDRPGLNRDLSQAIRSVKARAVKAEMM 178
             +  P E D+  +  SY D E    +R S CC+DR  L  D+  A++S++ R +KAE+ 
Sbjct: 191 --YQVPTECDDLTVDSSYNDEEGNLVIRASFCCQDRTDLMHDVINALKSLRLRTLKAEIA 248

Query: 179 TVGGRTR 185
           TVGGR +
Sbjct: 249 TVGGRVK 255


>AT4G38070.1 | Symbols:  | bHLH family protein |
            chr4:17876535-17882569 FORWARD
          Length = 1513

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 19/153 (12%)

Query: 33   GESVLSSSSRLEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVV 92
            G SV    S+ E K   A K H +AERRRR RIN+               DKAS+L E V
Sbjct: 1333 GFSVTKPKSKTESKEV-AAKKHSDAERRRRLRINSQFATLRTILPNLVKQDKASVLGETV 1391

Query: 93   HHVKELRKQAAHVARQDRDSCCGSESESEKYWPFPGESDETILSYCDGETKTMRVSVCCE 152
             +  EL+K    +                     P   D   L +C+      RV   C 
Sbjct: 1392 RYFNELKKMVQDIP------------------TTPSLEDNLRLDHCNNNRDLARVVFSCS 1433

Query: 153  DRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
            DR GL  ++++++++VKA+AV+AE+MTVGGRT+
Sbjct: 1434 DREGLMSEVAESMKAVKAKAVRAEIMTVGGRTK 1466


>AT1G68810.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr1:25861289-25862882 FORWARD
          Length = 368

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 20/148 (13%)

Query: 43  LEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQA 102
           ++ K+  A KSH EAERRRR+RIN H              DKASLLAEV+ HVKEL+++ 
Sbjct: 167 MDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELKRET 226

Query: 103 AHVARQDRDSCCGSESESEKYWPFPGESDETILSYCDGETK-----TMRVSVCCEDRPGL 157
           + ++  +                 P ESDE  +++ + E        ++ S+CCEDR  L
Sbjct: 227 SVISETNL---------------VPTESDELTVAFTEEEETGDGRFVIKASLCCEDRSDL 271

Query: 158 NRDLSQAIRSVKARAVKAEMMTVGGRTR 185
             D+ + +++++ + +KAE+ TVGGR +
Sbjct: 272 LPDMIKTLKAMRLKTLKAEITTVGGRVK 299


>AT2G41130.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr2:17143360-17144686 FORWARD
          Length = 253

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 23/163 (14%)

Query: 27  MEMDGAGESVLSSSSRLEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKAS 86
           + + G GE++       + ++  A ++HKEAERRRR+RIN+H              DKA+
Sbjct: 50  LAISGIGETMA------QDRALAALRNHKEAERRRRERINSHLNKLRNVLSCNSKTDKAT 103

Query: 87  LLAEVVHHVKELRKQAAHVARQDRDSCCGSESESEKYWPFPGESDE-TILSYCDGETK-- 143
           LLA+VV  V+EL++Q    +  D+                P E+DE ++L + D      
Sbjct: 104 LLAKVVQRVRELKQQTLETSDSDQ-------------TLLPSETDEISVLHFGDYSNDGH 150

Query: 144 -TMRVSVCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
              + S+CCEDR  L  DL + ++S+  + ++AEM+T+GGRTR
Sbjct: 151 IIFKASLCCEDRSDLLPDLMEILKSLNMKTLRAEMVTIGGRTR 193


>AT2G40200.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr2:16791098-16792027 FORWARD
          Length = 254

 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 22/148 (14%)

Query: 45  KKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAAH 104
           +K+    +SH+ AE+RRR RIN+H              DKA+LLA V+  VKEL+++AA 
Sbjct: 58  EKAESLSRSHRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELKQKAA- 116

Query: 105 VARQDRDSCCGSESESEKYWPFPGESDETIL---SYCDGETKT----MRVSVCCEDRPGL 157
                         ES  +   P E+DE  +   +  D E+ T     + S CCED+P  
Sbjct: 117 --------------ESPIFQDLPTEADEVTVQPETISDFESNTNTIIFKASFCCEDQPEA 162

Query: 158 NRDLSQAIRSVKARAVKAEMMTVGGRTR 185
             ++ + +  ++   ++AE+++VGGR R
Sbjct: 163 ISEIIRVLTKLQLETIQAEIISVGGRMR 190