Jatropha Genome Database

JcCB0004861.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004861.20 - phase: 0 
         (356 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57560.1 | Symbols:  | aspartate/glutamate/uridylate kinase f...   424   e-119

>AT3G57560.1 | Symbols:  | aspartate/glutamate/uridylate kinase
           family protein | chr3:21311164-21312207 REVERSE
          Length = 347

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/333 (66%), Positives = 252/333 (75%), Gaps = 17/333 (5%)

Query: 40  SVPNTVPSLTIKAASSLSSPATHKT---------ATSASPPD-------SPDRFRVDILS 83
           +V N   +L    + SL  P  +K          AT ++PP        SPD +RV+ILS
Sbjct: 16  TVSNPFKTLIPNKSPSLCYPTRNKNHHRLGFSIKATVSTPPSIATGNAPSPD-YRVEILS 74

Query: 84  ESLPYIQKFRGKTIVVKYGGAAMKVPELKAXXXXXXXXXXCVGLRPVLVHGGGPEINHWL 143
           ESLP+IQKFRGKTIVVKYGGAAM  PELK+          CVGLRP+LVHGGGP+IN +L
Sbjct: 75  ESLPFIQKFRGKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYL 134

Query: 144 KLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSLINKAGATAVGLSGMDGRLLMA 203
           K LNI   F +GLRVTDA TMEIVSMVLVGKVNK+LVSLIN AGATAVGLSG DGRLL A
Sbjct: 135 KQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTA 194

Query: 204 RPTPNSAQLGFVGEVTRVDSTILQPLIDNSHIPVIASVAADESGQSYNINADTVXXXXXX 263
           RP PNSAQLGFVGEV RVD ++L+PL+D  +IPVIASVAAD+SGQ+YNINADTV      
Sbjct: 195 RPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAA 254

Query: 264 XXXXXXXXXXTDVAGILENKDDPKSLVKEIDIKGVKKLIEEKKVAGGMIPKVNCCVRSLA 323
                     TDVAGILENK+DP SL+KEIDIKGVKK+IE+ KVAGGMIPKV CC+RSLA
Sbjct: 255 ALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLA 314

Query: 324 QGVRTASIIDGRVEHSLLHEIMSEEGIGTMITG 356
           QGV+TASIIDGR +HSLLHEIMS+EG GTMITG
Sbjct: 315 QGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 347