Jatropha Genome Database

JcCB0004861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004861.10 - phase: 0 /pseudo
         (337 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25000.1 | Symbols: ATAMY1, AMY1 | AMY1 (ALPHA-AMYLASE-LIKE);...   159   3e-39
AT1G69830.1 | Symbols: ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3...   105   3e-23
AT1G76130.1 | Symbols: ATAMY2, AMY2 | AMY2 (ALPHA-AMYLASE-LIKE 2...    74   2e-13

>AT4G25000.1 | Symbols: ATAMY1, AMY1 | AMY1 (ALPHA-AMYLASE-LIKE);
           alpha-amylase | chr4:12852109-12853825 REVERSE
          Length = 423

 Score =  159 bits (401), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/176 (46%), Positives = 103/176 (58%), Gaps = 47/176 (26%)

Query: 2   FNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE----------------- 44
           FNWESWK EGG+YN L NS+ ++A++GITH+WLPPPS SV+ E                 
Sbjct: 32  FNWESWKKEGGFYNSLHNSIDDIANAGITHLWLPPPSQSVAPEGYLPGKLYDLNSSKYGS 91

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                        E++D++  +  FEGGT  DRLDW PSF+C +
Sbjct: 92  EAELKSLIKALNQKGIKALADIVINHRTAERKDDKCGYCYFEGGTSDDRLDWDPSFVCRN 151

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFAR 131
           D  +  G GN DTG DF+ APDIDH+NPRVQ+ LS+WM WLK EIGF GWRFD+ R
Sbjct: 152 DPKFP-GTGNLDTGGDFDGAPDIDHLNPRVQKELSEWMNWLKTEIGFHGWRFDYVR 206



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 45/70 (64%)

Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTSQ 327
           LKE I KL+ +R +N I   S +   A++AD Y+A ID+K+I K+GP  D G LVP    
Sbjct: 350 LKESISKLVAIRNKNGIGSTSSVTIKAAEADLYLAMIDDKVIMKIGPKQDVGTLVPSNFA 409

Query: 328 IAASGIDYTV 337
           +A SG+D+ V
Sbjct: 410 LAYSGLDFAV 419


>AT1G69830.1 | Symbols: ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3);
           alpha-amylase | chr1:26288518-26293003 REVERSE
          Length = 887

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 91/197 (46%), Gaps = 52/197 (26%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
           GFNWES K+ G WY  L     ELAS G T +WLPPP+ SVS E                
Sbjct: 501 GFNWESNKS-GRWYLELQEKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNLNSRYGT 559

Query: 45  -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
                                          ++  G+W++F     G RL+W    + +D
Sbjct: 560 IDELKDTVKKFHKVGIKVLGDAVLNHRCAHFKNQNGVWNLF-----GGRLNWDDRAVVAD 614

Query: 76  DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
           D  +  G+GN  +G +F+ AP+IDH    V++ + +W+ W+ +E+G+DGWR DF R  + 
Sbjct: 615 DPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFVRGFWG 673

Query: 136 CFYKDINDKQKAKFCSG 152
            + KD  D  K  F  G
Sbjct: 674 GYVKDYMDASKPYFAVG 690


>AT1G76130.1 | Symbols: ATAMY2, AMY2 | AMY2 (ALPHA-AMYLASE-LIKE 2);
           alpha-amylase/ calcium ion binding / catalytic/ cation
           binding | chr1:28561647-28563914 FORWARD
          Length = 413

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 41/190 (21%)

Query: 1   GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAEEK--QDNRGIWSIFE- 57
            +NWES K +  W+  L   VP++A SG T  WLPPPS S++ E    QD   + S +  
Sbjct: 31  AYNWESHKYD--WWRNLDGKVPDIAKSGFTSAWLPPPSQSLAPEGYLPQDLYSLNSAYGS 88

Query: 58  ----------------------------GGTPG-----DRLDWGPSFICSDDTLYS--DG 82
                                       G T G     +R D G S    +  + S   G
Sbjct: 89  EHLLKSLLRKMKQYKVRAMADIVINHRVGTTRGHGGMYNRYD-GISLPWDEHAVTSCTGG 147

Query: 83  KGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFTCFYKDIN 142
            GN  TG +FN  P++DH    V++ +  W+ WL++ +GF  +RFDFAR     + K+  
Sbjct: 148 LGNRSTGDNFNGVPNVDHTQHFVRKDIIGWLRWLRNTVGFQDFRFDFARGYSANYVKEYI 207

Query: 143 DKQKAKFCSG 152
              K  F  G
Sbjct: 208 GAAKPLFSVG 217