Jatropha Genome Database

JcCB0004801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004801.10 - phase: 0 
         (209 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12830.1 | Symbols:  | unknown protein | chr1:4374412-4375053...    61   6e-10

>AT1G12830.1 | Symbols:  | unknown protein | chr1:4374412-4375053
           REVERSE
          Length = 213

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 171 PLAEVDLDNILPSRTRRRAAQPGVYIANDLGN 202
           PLAEVDLDNILPSRTRRR++QPGV+I N+  N
Sbjct: 167 PLAEVDLDNILPSRTRRRSSQPGVFIPNEFSN 198