Jatropha Genome Database

JcCB0004761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004761.20 - phase: 0 /TE/pseudo
         (300 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29090.1 | Symbols:  | reverse transcriptase, putative / RNA-...   162   3e-40
AT3G09510.1 | Symbols:  | nucleic acid binding | chr3:2921804-29...    90   1e-18
ATMG00310.1 | Symbols: ORF154 | hypothetical protein | chrM:9088...    77   9e-15
AT2G02650.1 | Symbols:  | reverse transcriptase-related | chr2:7...    58   8e-09

>AT4G29090.1 | Symbols:  | reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative |
           chr4:14333528-14335255 FORWARD
          Length = 575

 Score =  162 bits (409), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 159/313 (50%), Gaps = 16/313 (5%)

Query: 1   MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKDGGMSFRNLHFFNV 60
           M  FLLP ++  ++      FWW  K++  KG+HW +WD +   K +GG+ F+++  FN+
Sbjct: 8   MACFLLPKTVCKQIISVLADFWWRNKQEA-KGMHWKAWDHLSCYKAEGGIGFKDIEAFNL 66

Query: 61  AMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVR 120
           A+L KQ WR+L+  ++L  ++FK+++F + D LNA LGS P FV K+I  S ++L+ G R
Sbjct: 67  ALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGAR 126

Query: 121 WRVEDERDINVVKKPWI---PRESSF----VIEDGSSSIDPDFRVQNLFCHEGKRWDIDK 173
             V +  DI + +  W+   P  ++     V     +S+    +V +L    G+ W  D 
Sbjct: 127 AVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDV 186

Query: 174 IMNLFCANDVRAIVGIPLSIFNSPDVLVWHYKRRGIYSVKSSYFMALKVFGKEPERRD-- 231
           I  LF   + + I  +        D   W Y   G Y+VKS Y++  ++  K    ++  
Sbjct: 187 IEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVS 246

Query: 232 ----GEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-IN 285
                 I+ K+W+    P ++ F+W+ L N +P    L  R L  +  C  C   +E +N
Sbjct: 247 EPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVN 306

Query: 286 HVLVTCERARSVW 298
           H+L  C  AR  W
Sbjct: 307 HLLFKCTFARLTW 319


>AT3G09510.1 | Symbols:  | nucleic acid binding |
           chr3:2921804-2923258 FORWARD
          Length = 484

 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 105/233 (45%), Gaps = 23/233 (9%)

Query: 82  FKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGVRWRVEDERDI-----NVV-KKP 135
            KA++F  V  L+A +     +   ++L    LLK G R  + D ++I     N+V   P
Sbjct: 1   MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60

Query: 136 WIPRESSFVIEDGSSSIDPDFRVQNLFCHEGKR--WDIDKIMNLFCANDVRAIVGIPLSI 193
             P  +    ++          + NLF  +G    WD  KI      +D   I  I L+ 
Sbjct: 61  PRPLNTEETYKE--------MTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAK 112

Query: 194 FNSPDVLVWHYKRRGIYSVKSSYFM-----ALKVFGKEPERRDGEIWGKLWRLSV-PPVK 247
              PD ++W+Y   G Y+V+S Y++     +  +    P     ++  ++W L + P +K
Sbjct: 113 SKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLK 172

Query: 248 DFVWRVLRNVVPTKDRLRNRGLDIDRKCFFCDGEQE-INHVLVTCERARSVWR 299
            F+WR L   + T +RL  RG+ ID  C  C  E E INH L TC  A   WR
Sbjct: 173 HFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWR 225


>ATMG00310.1 | Symbols: ORF154 | hypothetical protein |
           chrM:90883-91347 REVERSE
          Length = 154

 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 1   MRVFLLPLSLSDELHKFTNKFWWGLKKDGGKGIHWLSWDRMCGRKKD-GGMSFRNLHFFN 59
           M  F L   L  +L     +FWW    +  + I W++W ++C  K+D GG+ FR+L +FN
Sbjct: 8   MSCFRLSKLLCKKLTSAMTEFWWS-SCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFN 66

Query: 60  VAMLEKQGWRLLTETDTLFYRIFKAKHFSRVDFLNASLGSNPIFV*KNILTSSKLLKHGV 119
            A+L KQ +R++ +  TL  R+ ++++F     +  S+G+ P +  ++I+   +LL  G+
Sbjct: 67  QALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGL 126

Query: 120 RWRVEDERDINVVKKPWIPRESSF 143
              + D     V    WI  E+  
Sbjct: 127 LRTIGDGIHTKVWLDRWIMDETPL 150


>AT2G02650.1 | Symbols:  | reverse transcriptase-related |
           chr2:735411-736546 FORWARD
          Length = 365

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 7/95 (7%)

Query: 212 VKSSYFMA-----LKVFGKEPERRDGEIWGKLWRLSVPP-VKDFVWRVLRNVVPTKDRLR 265
           ++S Y++A     L+    +P     E+   +W+L V P +K F+WR +   + T  RLR
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65

Query: 266 NRGLDIDRKCFFCDGEQE-INHVLVTCERARSVWR 299
           +R +D D  C  C  E+E I+H++  C   +SVWR
Sbjct: 66  SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWR 100