Jatropha Genome Database

JcCB0004761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004761.10 + phase: 0 
         (97 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39250.1 | Symbols: ATRL1 | ATRL1 (ARABIDOPSIS RAD-LIKE 1); D...   100   2e-22
AT1G75250.1 | Symbols: ATRL6 | ATRL6 (ARABIDOPSIS RAD-LIKE 6); t...    99   7e-22
AT1G75250.2 | Symbols: ATRL6 | ATRL6 (ARABIDOPSIS RAD-LIKE 6); t...    98   9e-22
AT1G19510.1 | Symbols: ATRL5 | ATRL5 (ARABIDOPSIS RAD-LIKE 5); D...    94   2e-20
AT2G21650.1 | Symbols: MEE3, ATRL2 | MEE3 (MATERNAL EFFECT EMBRY...    91   1e-19
AT2G18328.1 | Symbols: ATRL4 | ATRL4 (ARABIDOPSIS RAD-LIKE 4); D...    77   3e-15
AT5G58900.1 | Symbols:  | myb family transcription factor | chr5...    68   1e-12
AT2G38090.1 | Symbols:  | myb family transcription factor | chr2...    67   2e-12
AT5G05790.1 | Symbols:  | myb family transcription factor | chr5...    64   1e-11
AT4G36570.1 | Symbols: ATRL3 | ATRL3 (ARABIDOPSIS RAD-LIKE 3); D...    64   2e-11
AT3G11280.2 | Symbols:  | myb family transcription factor | chr3...    62   5e-11
AT3G11280.1 | Symbols:  | myb family transcription factor | chr3...    62   5e-11
AT5G04760.1 | Symbols:  | myb family transcription factor | chr5...    54   2e-08
AT1G49010.1 | Symbols:  | myb family transcription factor | chr1...    52   9e-08
AT5G23650.1 | Symbols:  | myb family transcription factor | chr5...    48   1e-06
AT5G01200.1 | Symbols:  | myb family transcription factor | chr5...    48   1e-06
AT5G08520.1 | Symbols:  | myb family transcription factor | chr5...    48   1e-06

>AT4G39250.1 | Symbols: ATRL1 | ATRL1 (ARABIDOPSIS RAD-LIKE 1);
          DNA binding / transcription factor |
          chr4:18271457-18271857 REVERSE
          Length = 100

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 59/83 (71%), Gaps = 3/83 (3%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WTAKQ+K FE ALA YD+DTP+RW+N+AK+VG    EEVKR Y++LV DIN+IE   VP 
Sbjct: 14 WTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGHVPF 73

Query: 73 PNYK---NCYEGKSRQESKIISN 92
          PNY+    C  G+  QE K + N
Sbjct: 74 PNYRTSGGCTNGRLSQEEKRMRN 96


>AT1G75250.1 | Symbols: ATRL6 | ATRL6 (ARABIDOPSIS RAD-LIKE 6);
          transcription factor | chr1:28245073-28245453 REVERSE
          Length = 126

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 11 SNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKV 70
          S WT  Q+K+FE ALA+YDKDTPDRW N+AK VG    EEVKR YDILV D+ NIE  +V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 71 PIPNYKNCYEGKSRQ 85
          P+PNYK  +E  SR 
Sbjct: 70 PLPNYK-TFESNSRS 83


>AT1G75250.2 | Symbols: ATRL6 | ATRL6 (ARABIDOPSIS RAD-LIKE 6);
          transcription factor | chr1:28244463-28245453 REVERSE
          Length = 97

 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 11 SNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKV 70
          S WT  Q+K+FE ALA+YDKDTPDRW N+AK VG    EEVKR YDILV D+ NIE  +V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 71 PIPNYKNCYEGKSR 84
          P+PNYK  +E  SR
Sbjct: 70 PLPNYK-TFESNSR 82


>AT1G19510.1 | Symbols: ATRL5 | ATRL5 (ARABIDOPSIS RAD-LIKE 5);
          DNA binding / transcription factor |
          chr1:6756483-6757290 REVERSE
          Length = 100

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 16 KQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPIPNY 75
          KQ+K+FE ALA+YDKDTPDRW+N+AK VG  + EEVKR YDILV D+ NIE D VP+P Y
Sbjct: 15 KQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIEQDLVPLPKY 74

Query: 76 KNCYEG-KSR 84
          K    G KSR
Sbjct: 75 KTVDVGSKSR 84


>AT2G21650.1 | Symbols: MEE3, ATRL2 | MEE3 (MATERNAL EFFECT EMBRYO
          ARREST 3); DNA binding / transcription factor |
          chr2:9259654-9260419 FORWARD
          Length = 101

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 54/80 (67%), Gaps = 4/80 (5%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WT KQ+K FE ALA+YD+DTPDRW N+A+ VG    EE KR+YD+LV DI +IE   VP 
Sbjct: 14 WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 73 PNYK----NCYEGKSRQESK 88
          P+YK    N   G+ R E K
Sbjct: 74 PDYKTTTGNSNRGRLRDEEK 93


>AT2G18328.1 | Symbols: ATRL4 | ATRL4 (ARABIDOPSIS RAD-LIKE 4);
          DNA binding | chr2:7964478-7964711 FORWARD
          Length = 77

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query: 16 KQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPIPNY 75
          ++ K FE ALA +DKDTPDRW+ IA+ VG  + EEVKR Y++L+ D+N+IE  + P P Y
Sbjct: 14 REDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGRYPQPRY 73

Query: 76 KNC 78
          +N 
Sbjct: 74 RNT 76


>AT5G58900.1 | Symbols:  | myb family transcription factor |
          chr5:23783275-23784667 REVERSE
          Length = 288

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%)

Query: 3  SCSLSNPNSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDI 62
            + S   + WTA ++K FE ALA+YD +TPDRW+ +A ++      +V R+Y+ L  D+
Sbjct: 24 GVAASGEGATWTAAENKAFENALAVYDDNTPDRWQKVAAVIPGKTVSDVIRQYNDLEADV 83

Query: 63 NNIELDKVPIPNY 75
          ++IE   +P+P Y
Sbjct: 84 SSIEAGLIPVPGY 96


>AT2G38090.1 | Symbols:  | myb family transcription factor |
          chr2:15945278-15946775 FORWARD
          Length = 298

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 45/70 (64%)

Query: 8  NPNSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIEL 67
          N  + WTA+++K FE ALA YDKDTPDRW  +A ++      +V ++Y  L  D+++IE 
Sbjct: 24 NRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRELEEDVSDIEA 83

Query: 68 DKVPIPNYKN 77
            +PIP Y +
Sbjct: 84 GLIPIPGYAS 93


>AT5G05790.1 | Symbols:  | myb family transcription factor |
          chr5:1740724-1741671 REVERSE
          Length = 277

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 44/69 (63%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
          +S+WT +++K FE ALA+Y  DTPDRW  +A ++      +V R+Y  L  D+ +IE   
Sbjct: 28 SSSWTKEENKKFERALAVYADDTPDRWFKVAAMIPGKTISDVMRQYSKLEEDLFDIEAGL 87

Query: 70 VPIPNYKNC 78
          VPIP Y++ 
Sbjct: 88 VPIPGYRSV 96


>AT4G36570.1 | Symbols: ATRL3 | ATRL3 (ARABIDOPSIS RAD-LIKE 3);
          DNA binding / transcription factor |
          chr4:17254660-17254836 FORWARD
          Length = 58

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 35/44 (79%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYD 56
          WT K++KLFE ALA YD+DTPDRW N+A+ VG  + EEV+R Y+
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYE 55


>AT3G11280.2 | Symbols:  | myb family transcription factor |
          chr3:3533477-3534393 REVERSE
          Length = 263

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WT +++K+FE ALA+Y +D+PDRW  +A ++      +V ++Y  L  D+ +IE  +VPI
Sbjct: 33 WTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPI 92

Query: 73 PNY 75
          P Y
Sbjct: 93 PGY 95


>AT3G11280.1 | Symbols:  | myb family transcription factor |
          chr3:3533477-3534393 REVERSE
          Length = 263

 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 42/63 (66%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WT +++K+FE ALA+Y +D+PDRW  +A ++      +V ++Y  L  D+ +IE  +VPI
Sbjct: 33 WTKEENKMFERALAIYAEDSPDRWFKVASMIPGKTVFDVMKQYSKLEEDVFDIEAGRVPI 92

Query: 73 PNY 75
          P Y
Sbjct: 93 PGY 95


>AT5G04760.1 | Symbols:  | myb family transcription factor |
          chr5:1373752-1374529 REVERSE
          Length = 215

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
          +S WT  + K+FE AL ++ + +P+RW  IA  +   +  EV+  Y++LV+D+  I+  +
Sbjct: 3  SSQWTRSEDKMFEQALVLFPEGSPNRWERIADQL-HKSAGEVREHYEVLVHDVFEIDSGR 61

Query: 70 VPIPNY 75
          V +P+Y
Sbjct: 62 VDVPDY 67


>AT1G49010.1 | Symbols:  | myb family transcription factor |
          chr1:18132714-18133778 FORWARD
          Length = 314

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 11 SNWTAKQHKLFEYALAMY---DKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIEL 67
          + W+ ++ K FE A+A++   ++ T D+W  ++ +V     EEVK+ Y IL+ D+  IE 
Sbjct: 6  ATWSREEEKAFENAIALHCVEEEITEDQWNKMSSMVPSKALEEVKKHYQILLEDVKAIEN 65

Query: 68 DKVPIPNY 75
           +VP+P Y
Sbjct: 66 GQVPLPRY 73


>AT5G23650.1 | Symbols:  | myb family transcription factor |
          chr5:7969812-7971019 FORWARD
          Length = 337

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
           S+W+      FE ALA+Y+  T  RW+ IA +V     E+V   Y+IL  D+  IE   
Sbjct: 10 GSSWSKDDDIAFEKALAIYNDKTEIRWKKIATVVPGKTLEQVIEHYNILARDVMLIESGC 69

Query: 70 VPIPNYKNCYE 80
          V +P+Y +  E
Sbjct: 70 VRLPDYDDFLE 80


>AT5G01200.1 | Symbols:  | myb family transcription factor |
          chr5:77116-78294 FORWARD
          Length = 267

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 11 SNWTAKQHKLFEYALA-MYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
          + WTA+++K FE ALA + DKD  + W  IA ++      +V + Y  L +D+++IE   
Sbjct: 28 ATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGL 87

Query: 70 VPIPNY 75
          +PIP Y
Sbjct: 88 IPIPGY 93


>AT5G08520.1 | Symbols:  | myb family transcription factor |
          chr5:2755470-2757741 REVERSE
          Length = 298

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query: 11 SNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKV 70
          S W+ +    FE ALA    ++ +RW  IA  V   + E++K  Y++LV D+  IE   V
Sbjct: 10 SVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVEDVTRIESGCV 69

Query: 71 PIPNY 75
          P+P Y
Sbjct: 70 PLPAY 74