Jatropha Genome Database

JcCB0004221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004221.20 + phase: 0 
         (115 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40010.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0A...   160   1e-40
AT3G09200.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B...   150   1e-37
AT3G11250.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0C...   149   4e-37
AT3G09200.2 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B...    75   1e-14

>AT2G40010.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0A) |
           chr2:16708578-16710448 REVERSE
          Length = 317

 Score =  160 bits (406), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 89/110 (80%)

Query: 1   MAIKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNT 60
           MA+K TKA+KK  YD KLC+LL+EYSQILVV ADNVGS QLQ+IR+GLRGDS+VLMGKNT
Sbjct: 1   MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           MMKRS+++HA+KTGN AF S            FTKGDLKEV EE+AKYKV
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 110


>AT3G09200.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B) |
           chr3:2823364-2825020 REVERSE
          Length = 320

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 85/108 (78%)

Query: 3   IKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNTMM 62
           +K TKA+KK  YD KLC+L+DEY+QILVV ADNVGS QLQ+IR+GLRGDS+VLMGKNTMM
Sbjct: 2   VKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 61

Query: 63  KRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           KRS+++H+E TGN A  +            FTKGDLKEV EE+AKYKV
Sbjct: 62  KRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 109


>AT3G11250.1 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0C) |
           chr3:3521453-3522826 FORWARD
          Length = 323

 Score =  149 bits (376), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 85/108 (78%)

Query: 3   IKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNTMM 62
           +K TKA+KK  YD KLC+L+DEY+QILVV ADNVGS QLQ+IR+GLRGDS+VLMGKNTMM
Sbjct: 2   VKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 61

Query: 63  KRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           KRS+++H+E +GN A  +            FTKGDLKEV EE+AKYKV
Sbjct: 62  KRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 109


>AT3G09200.2 | Symbols:  | 60S acidic ribosomal protein P0 (RPP0B) |
           chr3:2823364-2825020 REVERSE
          Length = 287

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 33/108 (30%)

Query: 3   IKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNTMM 62
           +K TKA+KK  YD KLC+L+DEY+QILV                                
Sbjct: 2   VKATKAEKKIAYDTKLCQLIDEYTQILV-------------------------------- 29

Query: 63  KRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
            RS+++H+E TGN A  +            FTKGDLKEV EE+AKYKV
Sbjct: 30  -RSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKV 76