Jatropha Genome Database

JcCB0004021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004021.20 - phase: 0 
         (204 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04590.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   268   2e-72
AT1G04590.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   262   9e-71
AT4G18975.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   140   8e-34
AT4G18975.3 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   139   1e-33
AT4G18975.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   139   1e-33
AT4G21190.1 | Symbols: emb1417 | emb1417 (embryo defective 1417)...   130   6e-31

>AT1G04590.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: emb1417 (embryo defective 1417) (TAIR:AT4G21190.1);
           Has 54 Blast hits to 54 proteins in 8 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52;
           Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
           | chr1:1258760-1261411 REVERSE
          Length = 381

 Score =  268 bits (684), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 123/181 (67%), Positives = 151/181 (83%), Gaps = 1/181 (0%)

Query: 1   MNMFLNLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKG 60
           +N  L+++D+KEAVYGALDAWVAWER FPI S++  + +LEKE QWHR+VQVIKW+LSKG
Sbjct: 150 VNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSKG 209

Query: 61  QGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECL 120
           QGNTMGTYGQLIRALDMD RA+EAH+ W KK+G DLHSVPW+LC  M+ IY+RNNML+ L
Sbjct: 210 QGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNNMLQEL 269

Query: 121 VKLFKGLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETHKGDNKKFRT 180
           VKLFK LE++DRKPP+K IVQ VA+AYE+LGML+EK+RV  KY HL   T   D+K  R+
Sbjct: 270 VKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYSHLLLGT-PSDDKPSRS 328

Query: 181 T 181
           +
Sbjct: 329 S 329


>AT1G04590.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: pentatricopeptide (PPR) repeat-containing protein
           (TAIR:AT4G18975.3); Has 54 Blast hits to 54 proteins in
           8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr1:1258760-1261411 REVERSE
          Length = 384

 Score =  262 bits (670), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 123/184 (66%), Positives = 151/184 (82%), Gaps = 4/184 (2%)

Query: 1   MNMFLNLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKG 60
           +N  L+++D+KEAVYGALDAWVAWER FPI S++  + +LEKE QWHR+VQVIKW+LSKG
Sbjct: 150 VNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSKG 209

Query: 61  QGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECL 120
           QGNTMGTYGQLIRALDMD RA+EAH+ W KK+G DLHSVPW+LC  M+ IY+RNNML+ L
Sbjct: 210 QGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNNMLQEL 269

Query: 121 V---KLFKGLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETHKGDNKK 177
           V   KLFK LE++DRKPP+K IVQ VA+AYE+LGML+EK+RV  KY HL   T   D+K 
Sbjct: 270 VKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYSHLLLGT-PSDDKP 328

Query: 178 FRTT 181
            R++
Sbjct: 329 SRSS 332


>AT4G18975.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:10392170-10393503 REVERSE
          Length = 260

 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 1   MNMFLNLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKG 60
           + M   L + KEAVYGAL+ WVAWE +FPI +  +AL  L K  QWHRV+Q+ KWMLSKG
Sbjct: 75  VRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKG 134

Query: 61  QGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECL 120
           QG TMGTY  L+ A DMD RADEA   W+  + T   S+P  L   M+++Y  +++ + +
Sbjct: 135 QGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKV 194

Query: 121 VKLFKGLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYI 164
           +++F  +E     P E S  ++VA A+  L   E +  + ++Y+
Sbjct: 195 IEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYL 237


>AT4G18975.3 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:10392170-10393665 REVERSE
          Length = 287

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 1   MNMFLNLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKG 60
           + M   L + KEAVYGAL+ WVAWE +FPI +  +AL  L K  QWHRV+Q+ KWMLSKG
Sbjct: 102 VRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKG 161

Query: 61  QGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECL 120
           QG TMGTY  L+ A DMD RADEA   W+  + T   S+P  L   M+++Y  +++ + +
Sbjct: 162 QGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKV 221

Query: 121 VKLFKGLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYI 164
           +++F  +E     P E S  ++VA A+  L   E +  + ++Y+
Sbjct: 222 IEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYL 264


>AT4G18975.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:10392170-10393665 REVERSE
          Length = 287

 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 1   MNMFLNLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKG 60
           + M   L + KEAVYGAL+ WVAWE +FPI +  +AL  L K  QWHRV+Q+ KWMLSKG
Sbjct: 102 VRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKG 161

Query: 61  QGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECL 120
           QG TMGTY  L+ A DMD RADEA   W+  + T   S+P  L   M+++Y  +++ + +
Sbjct: 162 QGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKV 221

Query: 121 VKLFKGLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYI 164
           +++F  +E     P E S  ++VA A+  L   E +  + ++Y+
Sbjct: 222 IEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYL 264


>AT4G21190.1 | Symbols: emb1417 | emb1417 (embryo defective 1417) |
           chr4:11292493-11293763 REVERSE
          Length = 307

 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 66/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 6   NLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTM 65
            L + KE VYGALD+++AWE +FP+  +++AL+ LE E++W +++QV KWMLSKGQG TM
Sbjct: 67  GLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTM 126

Query: 66  GTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFK 125
           GTY  L+ AL  D+R DEA   W+K     L   P +    M+SIYY+ +M + L ++F 
Sbjct: 127 GTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFA 186

Query: 126 GLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKY 163
            +E    K P  +IV  V   +  L M ++ +++ +KY
Sbjct: 187 DMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY 223