Jatropha Genome Database
- JcCB0003651.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0003651.10 + phase: 0 /partial
(573 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G12120.1 | Symbols: | unknown protein | chr1:4114933-4116469... 72 9e-13
AT1G62530.2 | Symbols: | unknown protein | chr1:23146332-231473... 69 8e-12
AT1G62530.1 | Symbols: | unknown protein | chr1:23146332-231473... 69 8e-12
>AT1G12120.1 | Symbols: | unknown protein | chr1:4114933-4116469
REVERSE
Length = 483
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 127/249 (51%), Gaps = 38/249 (15%)
Query: 345 EVSSEKSEIENALFS-CNDQSQNTCQDGHGNKSPSSCKSYCISDNDSSSAKTKYSGITS- 402
E S EKS I++ C+ Q QN + G SP+S S C ++N+S + S +
Sbjct: 220 ETSYEKSGIDDGSTPLCSPQCQNV-HEKDGTASPASDTSCCTTENNSRIESRRSSSPRAL 278
Query: 403 -GVLKTQLG-SQVGDVISGEHDQKTCDGIDIKNDCYTKKEESANVDVLIKEAAEMLIQIS 460
+T+L + D++ +N C ++++S+ V I+ AAE L+ IS
Sbjct: 279 QPSCRTRLEFTNTEDLLE-------------ENGCCNEEDDSSEV---IQMAAESLVHIS 322
Query: 461 AKCSASHQYLYAKV-----GSKQMED--DKREQTQ----CSCDSFELMTLNLTESNLD-D 508
+ S +Q L +K+ S + +D DK E + CS DS+E TL ++E+N + D
Sbjct: 323 -EISYQNQDLQSKLVLRTNSSSEDQDFPDKPEMGKAKPGCSYDSYERHTLGISETNTEED 381
Query: 509 NSVSSKPI-EVDDIETXXXXX---XXXXXXXXXXXQKEILPSLASLSRHEILEDINIMEG 564
VSS + E+++I QKEILPSL SLSRHEI ED+NI+E
Sbjct: 382 FCVSSMALDELNNITRDNNKEIGLKLRRGRRMKNFQKEILPSLTSLSRHEIREDMNILEA 441
Query: 565 VLRSREYRK 573
VLRSREY+K
Sbjct: 442 VLRSREYKK 450
>AT1G62530.2 | Symbols: | unknown protein | chr1:23146332-23147386
REVERSE
Length = 312
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 19/143 (13%)
Query: 432 KNDCYTKKEESANVDVLIKEAAEMLIQISAKCSASHQYLYAKVGSKQMEDDKREQTQCSC 491
+N+ T+ E+S V I+ AAE L+ ISA SH S +++ R SC
Sbjct: 158 ENNSRTEGEDSCEV---IQMAAECLVHISA---VSHNQ------SHGVQEPGR-----SC 200
Query: 492 DSFELMTLNLTESNLDD-NSVSSKPIEVDDIETXXXXXXXXXXXXXXXXQKEILPSLASL 550
DSFEL TL + E+ ++ VSSK I D + QKEILP L SL
Sbjct: 201 DSFELHTLEIRETVPEELCCVSSKAI-YDFSKKKEFGVKLRRGRRMKNFQKEILPELVSL 259
Query: 551 SRHEILEDINIMEGVLRSREYRK 573
SRHEI EDIN++E V RSR+Y+K
Sbjct: 260 SRHEIREDINLLETVFRSRDYKK 282
>AT1G62530.1 | Symbols: | unknown protein | chr1:23146332-23147386
REVERSE
Length = 312
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 76/143 (53%), Gaps = 19/143 (13%)
Query: 432 KNDCYTKKEESANVDVLIKEAAEMLIQISAKCSASHQYLYAKVGSKQMEDDKREQTQCSC 491
+N+ T+ E+S V I+ AAE L+ ISA SH S +++ R SC
Sbjct: 158 ENNSRTEGEDSCEV---IQMAAECLVHISA---VSHNQ------SHGVQEPGR-----SC 200
Query: 492 DSFELMTLNLTESNLDD-NSVSSKPIEVDDIETXXXXXXXXXXXXXXXXQKEILPSLASL 550
DSFEL TL + E+ ++ VSSK I D + QKEILP L SL
Sbjct: 201 DSFELHTLEIRETVPEELCCVSSKAI-YDFSKKKEFGVKLRRGRRMKNFQKEILPELVSL 259
Query: 551 SRHEILEDINIMEGVLRSREYRK 573
SRHEI EDIN++E V RSR+Y+K
Sbjct: 260 SRHEIREDINLLETVFRSRDYKK 282