Jatropha Genome Database

JcCB0003511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003511.10 - phase: 0 
         (277 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13740.1 | Symbols: AFP2 | AFP2 (ABI FIVE BINDING PROTEIN 2) ...    96   2e-20
AT1G69260.1 | Symbols: AFP1 | AFP1 (ABI FIVE BINDING PROTEIN) | ...    80   2e-15
AT3G29575.4 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) ...    56   3e-08
AT3G29575.3 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) ...    56   3e-08
AT3G29575.1 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) ...    56   3e-08

>AT1G13740.1 | Symbols: AFP2 | AFP2 (ABI FIVE BINDING PROTEIN 2) |
           chr1:4713969-4715158 FORWARD
          Length = 348

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 74/124 (59%), Gaps = 6/124 (4%)

Query: 25  LEINRYPRDLLQRFMSTETQQQ--KTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTR 82
           L+I++YPRDLL+ FMS     +      +         LNLGLSLGGRFGVDK+ +KL R
Sbjct: 23  LDIDKYPRDLLRGFMSENGGGRVFHGGETNCDDESTIELNLGLSLGGRFGVDKTPRKLKR 82

Query: 83  SSSIAGSIPLAREHDAFNTPPLSYPV-LMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRR 141
           SSS+  ++P    +D+    P +Y V L RT+SLP            MQSLRR+EAKRRR
Sbjct: 83  SSSVLDTVPF---NDSTVAEPENYTVGLERTTSLPAEMEEEWRKRKEMQSLRRMEAKRRR 139

Query: 142 SEKQ 145
            EKQ
Sbjct: 140 CEKQ 143


>AT1G69260.1 | Symbols: AFP1 | AFP1 (ABI FIVE BINDING PROTEIN) |
           chr1:26039314-26040570 FORWARD
          Length = 345

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 70/130 (53%), Gaps = 18/130 (13%)

Query: 30  YPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSSSIAGS 89
           +PRDLLQRF+S   + +              LNLGLSLGGRFGVDKS  KL RSSS+  +
Sbjct: 19  FPRDLLQRFISNSVEGEDD--DEEEDDDEIELNLGLSLGGRFGVDKS-NKLVRSSSVVVT 75

Query: 90  IPLARE----HDAFN--TPPLSYPV---------LMRTSSLPXXXXXXXXXXXXMQSLRR 134
           +PL RE    H A    T  +S            LMRT+SLP            MQ+LRR
Sbjct: 76  MPLFREDHHHHQAAAMITTKVSTETVAGATRGTGLMRTTSLPAESEEEWRKRKEMQTLRR 135

Query: 135 LEAKRRRSEK 144
           + AKRRRSEK
Sbjct: 136 MAAKRRRSEK 145


>AT3G29575.4 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) |
           chr3:11382416-11383657 REVERSE
          Length = 231

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 13/87 (14%)

Query: 61  LNLGLSLGGRFGVDKSAK-KLTRSSSIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXX 119
           L+LGLSL GRFGVD  AK +L RS+S+   +   R              L RT SLP   
Sbjct: 18  LDLGLSLNGRFGVDPLAKTRLMRSTSVLDLVVNDRSG------------LSRTCSLPVET 65

Query: 120 XXXXXXXXXMQSLRRLEAKRRRSEKQK 146
                    +QSLRRLEAKR+RSEKQ+
Sbjct: 66  EEEWRKRKELQSLRRLEAKRKRSEKQR 92


>AT3G29575.3 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) |
           chr3:11382416-11383657 REVERSE
          Length = 231

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 13/87 (14%)

Query: 61  LNLGLSLGGRFGVDKSAK-KLTRSSSIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXX 119
           L+LGLSL GRFGVD  AK +L RS+S+   +   R              L RT SLP   
Sbjct: 18  LDLGLSLNGRFGVDPLAKTRLMRSTSVLDLVVNDRSG------------LSRTCSLPVET 65

Query: 120 XXXXXXXXXMQSLRRLEAKRRRSEKQK 146
                    +QSLRRLEAKR+RSEKQ+
Sbjct: 66  EEEWRKRKELQSLRRLEAKRKRSEKQR 92


>AT3G29575.1 | Symbols: AFP3 | AFP3 (ABI FIVE BINDING PROTEIN 3) |
           chr3:11382416-11383657 REVERSE
          Length = 231

 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 13/87 (14%)

Query: 61  LNLGLSLGGRFGVDKSAK-KLTRSSSIAGSIPLAREHDAFNTPPLSYPVLMRTSSLPXXX 119
           L+LGLSL GRFGVD  AK +L RS+S+   +   R              L RT SLP   
Sbjct: 18  LDLGLSLNGRFGVDPLAKTRLMRSTSVLDLVVNDRSG------------LSRTCSLPVET 65

Query: 120 XXXXXXXXXMQSLRRLEAKRRRSEKQK 146
                    +QSLRRLEAKR+RSEKQ+
Sbjct: 66  EEEWRKRKELQSLRRLEAKRKRSEKQR 92