Jatropha Genome Database

JcCB0003261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003261.20 - phase: 0 
         (441 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66120.2 | Symbols:  | 3-dehydroquinate synthase, putative | ...   637   0.0  
AT5G66120.1 | Symbols:  | 3-dehydroquinate synthase, putative | ...   581   e-166

>AT5G66120.2 | Symbols:  | 3-dehydroquinate synthase, putative |
           chr5:26431516-26433649 REVERSE
          Length = 442

 Score =  637 bits (1642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/380 (79%), Positives = 335/380 (88%), Gaps = 1/380 (0%)

Query: 63  QVMDQSVGEASS-KAPTIVEVDLGNRSYPIYIGSGLLDQPELLQRHVHGKRVLVVTNNTV 121
           Q+M++ + +  S  +PT+VEVDLG+RSYPIYIG+GLLD  ELLQRHVHGKRVLVVTN+ V
Sbjct: 63  QLMNEPLNDQRSISSPTVVEVDLGDRSYPIYIGAGLLDHSELLQRHVHGKRVLVVTNDRV 122

Query: 122 APIYLDRVVDALTRGNPNVSVESVILPDGEKYKNMETLMKVFDKAIESRLDRRCTFVALG 181
           AP+YLD+ +DALTRGNPNV+VESVILPDGEKYK+M+TLMKVFDKAIESRLDRRCTFVALG
Sbjct: 123 APLYLDKTIDALTRGNPNVTVESVILPDGEKYKDMDTLMKVFDKAIESRLDRRCTFVALG 182

Query: 182 GGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCV 241
           GGVIGDMCGYAAAS+LRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCV
Sbjct: 183 GGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQCV 242

Query: 242 LIDTDTLNTLPNRELASGLAEVVKYGLIRDAEFFEWQEKNMPKLMARDPDALAYAIKRSC 301
           L+DTDTLNTLP+RE+ASGLAEV+KYGLIRDAEFFEWQEKN+  L+ARDP ALA+AIKRSC
Sbjct: 243 LVDTDTLNTLPDREMASGLAEVIKYGLIRDAEFFEWQEKNIEALLARDPAALAFAIKRSC 302

Query: 302 ENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEXXXXXXXXXXXXSYRLG 361
           ENKA+VVS DEKESGLRATLNLGHTFGHAIETGFGYG+WLHGE            SYRLG
Sbjct: 303 ENKADVVSQDEKESGLRATLNLGHTFGHAIETGFGYGEWLHGEAVAAGTVMAVDMSYRLG 362

Query: 362 WIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSVMAVDKKVADXXXXXXXXXXXXXNCV 421
           WID+SIVKRV+ IL +AKLPT PP++MTV MFKS+MAVDKKVAD             NCV
Sbjct: 363 WIDESIVKRVNKILVRAKLPTTPPESMTVSMFKSIMAVDKKVADGLLRLILLKGPLGNCV 422

Query: 422 FTGDYDRKALDDTLRAFCKS 441
           FTGDYDR+ALD TLRAF KS
Sbjct: 423 FTGDYDREALDATLRAFSKS 442


>AT5G66120.1 | Symbols:  | 3-dehydroquinate synthase, putative |
           chr5:26431516-26433079 REVERSE
          Length = 338

 Score =  581 bits (1497), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 275/336 (81%), Positives = 299/336 (88%)

Query: 106 RHVHGKRVLVVTNNTVAPIYLDRVVDALTRGNPNVSVESVILPDGEKYKNMETLMKVFDK 165
           RHVHGKRVLVVTN+ VAP+YLD+ +DALTRGNPNV+VESVILPDGEKYK+M+TLMKVFDK
Sbjct: 3   RHVHGKRVLVVTNDRVAPLYLDKTIDALTRGNPNVTVESVILPDGEKYKDMDTLMKVFDK 62

Query: 166 AIESRLDRRCTFVALGGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINH 225
           AIESRLDRRCTFVALGGGVIGDMCGYAAAS+LRGVNFIQIPTTVMAQVDSSVGGKTGINH
Sbjct: 63  AIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINH 122

Query: 226 RLGKNLIGAFYQPQCVLIDTDTLNTLPNRELASGLAEVVKYGLIRDAEFFEWQEKNMPKL 285
           RLGKNLIGAFYQPQCVL+DTDTLNTLP+RE+ASGLAEV+KYGLIRDAEFFEWQEKN+  L
Sbjct: 123 RLGKNLIGAFYQPQCVLVDTDTLNTLPDREMASGLAEVIKYGLIRDAEFFEWQEKNIEAL 182

Query: 286 MARDPDALAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEX 345
           +ARDP ALA+AIKRSCENKA+VVS DEKESGLRATLNLGHTFGHAIETGFGYG+WLHGE 
Sbjct: 183 LARDPAALAFAIKRSCENKADVVSQDEKESGLRATLNLGHTFGHAIETGFGYGEWLHGEA 242

Query: 346 XXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSVMAVDKKVAD 405
                      SYRLGWID+SIVKRV+ IL +AKLPT PP++MTV MFKS+MAVDKKVAD
Sbjct: 243 VAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTVSMFKSIMAVDKKVAD 302

Query: 406 XXXXXXXXXXXXXNCVFTGDYDRKALDDTLRAFCKS 441
                        NCVFTGDYDR+ALD TLRAF KS
Sbjct: 303 GLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 338