Jatropha Genome Database
- JcCB0003071.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0003071.30 - phase: 0
(398 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26350.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 194 8e-50
AT1G13050.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 169 2e-42
AT1G13050.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 155 3e-38
AT4G26490.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 154 9e-38
AT5G56050.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 139 2e-33
>AT3G26350.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
pedicel, root, carpel, stamen; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Harpin-induced 1
(InterPro:IPR010847); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3161
Blast hits to 2320 proteins in 288 species: Archae - 6;
Bacteria - 135; Metazoa - 1071; Fungi - 426; Plants -
961; Viruses - 219; Other Eukaryotes - 343 (source: NCBI
BLink). | chr3:9653660-9654730 REVERSE
Length = 356
Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 127/198 (64%), Gaps = 2/198 (1%)
Query: 203 GLRAPAPQK-TRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFEVSSVTLNAA 261
G R P P + T +TW A CAIFW RPR+P ++S+ LNAA
Sbjct: 159 GPRLPPPSRETNAMTWSAAFCCAIFWVILILGGLIILIVYLVYRPRSPYVDISAANLNAA 218
Query: 262 YIDADALLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLIATQYIESFSTPKTESRF 321
Y+D LLN D+++LAN TNP+KK SV+F+++ +LYY NTLIATQYIE F PK S F
Sbjct: 219 YLDMGFLLNGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMF 278
Query: 322 ANIHMISSQVRLPLGDSVQLQNQISKNGVIFDVKGSFKVRSNLG-IFRYSYRLYGHCKIM 380
AN+H++SSQV+L S +LQ QI V+ +++G F RS++G +FRYSY+L+ HC +
Sbjct: 279 ANVHLVSSQVQLQATQSRELQRQIETGPVLLNLRGMFHARSHIGPLFRYSYKLHTHCSVS 338
Query: 381 VTAPPSGVLRATRCTTKR 398
+ PP G +RA RC TKR
Sbjct: 339 LNGPPLGAMRARRCNTKR 356
>AT1G13050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
14 plant structures; EXPRESSED DURING: 9 growth stages;
CONTAINS InterPro DOMAIN/s: Harpin-induced 1
(InterPro:IPR010847); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G26350.1); Has 384
Blast hits to 355 proteins in 83 species: Archae - 0;
Bacteria - 20; Metazoa - 86; Fungi - 33; Plants - 210;
Viruses - 7; Other Eukaryotes - 28 (source: NCBI BLink).
| chr1:4450568-4451521 FORWARD
Length = 317
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 121/192 (63%), Gaps = 1/192 (0%)
Query: 208 APQKTRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFEVSSVTLNAAYIDADA 267
P++T+P+T CAI RPR+P F++S+ TLN A +D
Sbjct: 126 GPKRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGY 185
Query: 268 LLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLIATQYIESFSTPKTESRFANIHMI 327
+LN D++++ NFTNP+KK SVDF++++ +LY+ NTLIAT++IE F PK S F + H++
Sbjct: 186 VLNGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLV 245
Query: 328 SSQVRLPLGDSVQLQNQISKNGVIFDVKGSFKVRSNLG-IFRYSYRLYGHCKIMVTAPPS 386
SSQV++ + S LQ Q+ V+ +++G+F RSNLG + RYSY L+ C I + PP+
Sbjct: 246 SSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPA 305
Query: 387 GVLRATRCTTKR 398
G +RA RC TKR
Sbjct: 306 GTMRARRCNTKR 317
>AT1G13050.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro
DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G26350.1). | chr1:4450964-4451521 FORWARD
Length = 185
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 245 RPRNPRFEVSSVTLNAAYIDADALLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLI 304
RPR+P F++S+ TLN A +D +LN D++++ NFTNP+KK SVDF++++ +LY+ NTLI
Sbjct: 31 RPRSPYFDISAATLNTANLDMGYVLNGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLI 90
Query: 305 ATQYIESFSTPKTESRFANIHMISSQVRLPLGDSVQLQNQISKNGVIFDVKGSFKVRSNL 364
AT++IE F PK S F + H++SSQV++ + S LQ Q+ V+ +++G+F RSNL
Sbjct: 91 ATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNL 150
Query: 365 G-IFRYSYRLYGHCKIMVTAPPSGVLRATRCTTKR 398
G + RYSY L+ C I + PP+G +RA RC TKR
Sbjct: 151 GSLMRYSYWLHTQCSISLNTPPAGTMRARRCNTKR 185
>AT4G26490.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 11 plant
structures; EXPRESSED DURING: 4 anthesis, LP.04 four
leaves visible, F mature embryo stage, petal
differentiation and expansion stage, E expanded
cotyledon stage; CONTAINS InterPro DOMAIN/s:
Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G56050.1); Has 263 Blast hits to 263 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:13380425-13381231 FORWARD
Length = 268
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 116/205 (56%)
Query: 194 DHRSRHRPLGLRAPAPQKTRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFEV 253
D R + LR P +T W A C +F RPR P F++
Sbjct: 64 DAEPRKDRVILRQPRSSRTSLWIWCVAGFCFVFSLLLIFFAIATLIVFLAIRPRIPVFDI 123
Query: 254 SSVTLNAAYIDADALLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLIATQYIESFS 313
+ L+ Y D N D+S+L NFTNPNKK+ V F + I+L++ N LIA Q ++ F
Sbjct: 124 PNANLHTIYFDTPEFFNGDLSMLVNFTNPNKKIEVKFEKLRIELFFFNRLIAAQVVQPFL 183
Query: 314 TPKTESRFANIHMISSQVRLPLGDSVQLQNQISKNGVIFDVKGSFKVRSNLGIFRYSYRL 373
K E+R I +ISS V LP+ +V+L+ Q+ N + ++++G+FKV+++ G+ YSY+L
Sbjct: 184 QKKHETRLEPIRLISSLVGLPVNHAVELRRQLENNKIEYEIRGTFKVKAHFGMIHYSYQL 243
Query: 374 YGHCKIMVTAPPSGVLRATRCTTKR 398
+G C++ +T PP+G+L + CTTK+
Sbjct: 244 HGRCQLQMTGPPTGILISRNCTTKK 268
>AT5G56050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; CONTAINS InterPro DOMAIN/s: Harpin-induced
1 (InterPro:IPR010847); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G26490.1);
Has 322 Blast hits to 322 proteins in 28 species: Archae
- 0; Bacteria - 8; Metazoa - 10; Fungi - 1; Plants -
299; Viruses - 2; Other Eukaryotes - 2 (source: NCBI
BLink). | chr5:22701167-22702018 REVERSE
Length = 283
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 115/200 (57%)
Query: 199 HRPLGLRAPAPQKTRPITWLGAALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFEVSSVTL 258
H + L +T P W GAALC IF +PR P F++S+ L
Sbjct: 83 HETMVLLQLRTSRTNPWIWCGAALCFIFSILLIVFGIATLILYLAVKPRTPVFDISNAKL 142
Query: 259 NAAYIDADALLNADISLLANFTNPNKKVSVDFNHMIIDLYYGNTLIATQYIESFSTPKTE 318
N ++ N D+ L NFTNPNKK++V F +++++L++ +T IATQ + FS +
Sbjct: 143 NTILFESPVYFNGDMLLQLNFTNPNKKLNVRFENLMVELWFADTKIATQGVLPFSQRNGK 202
Query: 319 SRFANIHMISSQVRLPLGDSVQLQNQISKNGVIFDVKGSFKVRSNLGIFRYSYRLYGHCK 378
+R I +IS+ V LP+ ++L+ Q++ N + ++++ +F+V++ G+ YSY L+G C+
Sbjct: 203 TRLEPIRLISNLVFLPVNHILELRRQVTSNRIAYEIRSNFRVKAIFGMIHYSYMLHGICQ 262
Query: 379 IMVTAPPSGVLRATRCTTKR 398
+ +++PP+G L CTTKR
Sbjct: 263 LQLSSPPAGGLVYRNCTTKR 282