Jatropha Genome Database

JcCB0002291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0002291.10 - phase: 0 /partial
         (187 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,...   167   3e-42
AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,...    66   1e-11
AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446 F...    47   6e-06
AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038 F...    47   7e-06

>AT2G20020.1 | Symbols: CAF1, ATCAF1 | CAF1; RNA splicing factor,
           transesterification mechanism | chr2:8644464-8647090
           FORWARD
          Length = 701

 Score =  167 bits (423), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 125/191 (65%), Gaps = 14/191 (7%)

Query: 1   MALKLFPVQFPIFSPLLNPNPIQNPSQRPLFEVHFSRWNNANARKFNEQRRAQKEIEDDI 60
           M+LKL    FPIF+P L PN   NP  R   E+ FSRW NANA +F ++RR+Q+E+E +I
Sbjct: 1   MSLKLN-TPFPIFAPSLFPN--HNP--RAPSEIRFSRWGNANAERFEQRRRSQEELEAEI 55

Query: 61  RRQRRFDSATNIVQNYDS--ATKTTSTETFKXXXXXXXXXXXXXXXRKSKYSKPKTHPAF 118
           RR RRFD+AT IV  +DS  A     T  F+               R+SKYSKP + P  
Sbjct: 56  RRDRRFDAATKIVHTHDSEAAAAEPKTSPFRSRGTPSLPSARSIPGRRSKYSKPDSGPNR 115

Query: 119 RRVSTRITQPKDDESPIERNA--NIKLSEDGLSYVVNGAPFEFKYSYTESPKVKPLKLRE 176
            +      +P+  +SP + +A   +KLSEDGL+YV+NGAPFEFKYSYTE+PKVKPLKLRE
Sbjct: 116 PK-----NKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTETPKVKPLKLRE 170

Query: 177 PPFSPFGPTTM 187
           P ++PFGPTTM
Sbjct: 171 PAYAPFGPTTM 181


>AT1G23400.1 | Symbols: CAF2, ATCAF2 | CAF2; RNA splicing factor,
           transesterification mechanism | chr1:8312199-8314740
           REVERSE
          Length = 564

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 111 KPKTHPAFR--RVSTRITQP-KDDESPIERNANIKLSEDGLSYVVNGAPFEFKYSYTESP 167
           KP+++PA +     TR  +P K+     + +  I + + G+SY + GAPFEF++SY+E+P
Sbjct: 62  KPQSNPALKLPHHRTRYYKPVKEGVISSDGDRTILIGDSGVSYQLPGAPFEFQFSYSETP 121

Query: 168 KVKPLKLREPPFSPFGPTTM 187
           KVKP+ +REP F PF P TM
Sbjct: 122 KVKPVGIREPAFMPFAPPTM 141


>AT4G31010.1 | Symbols:  | RNA binding | chr4:15106708-15108446
           FORWARD
          Length = 405

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 144 SEDGLSYVVNGAPFEFKYSYTESPK-VKPLKLREPPFSPFGPTTM 187
           S +G+  V +  PF+F++SYTES   V+P+ LREP +SPFGP  +
Sbjct: 72  SLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGPDRL 116


>AT4G31010.2 | Symbols:  | RNA binding | chr4:15106708-15108038
           FORWARD
          Length = 341

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 144 SEDGLSYVVNGAPFEFKYSYTESPK-VKPLKLREPPFSPFGP 184
           S +G+  V +  PF+F++SYTES   V+P+ LREP +SPFGP
Sbjct: 72  SLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPKYSPFGP 113