Jatropha Genome Database

JcCB0001721.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001721.30 + phase: 0 
         (74 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52820.1 | Symbols:  | WD-40 repeat family protein / notchles...   103   2e-23

>AT5G52820.1 | Symbols:  | WD-40 repeat family protein / notchless
          protein, putative | chr5:21401423-21404203 FORWARD
          Length = 473

 Score =  103 bits (257), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 1  MEVETVNNVMCQLKDREGTALGAPLYLPQNAGPQQLMQIVNKLLNNEEKLPYSFYISDQE 60
          M+ +    VMC L D EGT LG+ +Y+PQ AGP QL Q+VN+ L+NEE LPYSFY+SD+E
Sbjct: 4  MDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEE 63

Query: 61 LLVPLETYLQKNK 73
          LLVP+ TYL+KNK
Sbjct: 64 LLVPVGTYLEKNK 76