Jatropha Genome Database
- JcCB0001721.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0001721.10 + phase: 1 /partial
(205 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS ... 293 4e-80
AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1 | LDL1 (LSD1-LIKE1); a... 71 5e-13
AT3G10390.1 | Symbols: FLD | FLD (FLOWERING LOCUS D); amine oxid... 60 6e-10
AT3G13682.1 | Symbols: LDL2 | LDL2 (LSD1-LIKE2); amine oxidase/ ... 57 7e-09
AT2G43020.1 | Symbols: ATPAO2 | ATPAO2 (Polyamine oxidase 2); am... 56 1e-08
AT1G65840.1 | Symbols: ATPAO4, PAO4 | ATPAO4 (ARABIDOPSIS THALIA... 56 1e-08
AT3G59050.1 | Symbols: ATPAO3 | ATPAO3 (Polyamine oxidase 3); po... 55 4e-08
AT4G16310.1 | Symbols: LDL3 | LDL3 (LSD1-LIKE3); amine oxidase/ ... 50 1e-06
>AT5G13700.1 | Symbols: ATPAO1, APAO, PAO1 | ATPAO1 (ARABIDOPSIS
THALIANA POLYAMINE OXIDASE 1); FAD binding / polyamine
oxidase | chr5:4420222-4422974 REVERSE
Length = 472
Score = 293 bits (751), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 137/175 (78%), Positives = 154/175 (88%), Gaps = 9/175 (5%)
Query: 1 PCSPEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAM 60
PC P +EFFIYAHE+RGY+TFWQHMENAYPGSNILVVTLTN +SKRVEAQSD+ET+KEAM
Sbjct: 287 PCGPGQEFFIYAHEQRGYFTFWQHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAM 346
Query: 61 EVLRDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVGRIFFTGEH 120
VLRDMFG IP ATDILVPRWWNNRFQRGSYSNYP+IS+NQ+L +IK+PVGRIFFTGEH
Sbjct: 347 SVLRDMFGATIPYATDILVPRWWNNRFQRGSYSNYPMISDNQLLQNIKAPVGRIFFTGEH 406
Query: 121 TSERFNGYVHGGYLSGIDTSKSLLEVMREEKGRKNESQTFLLEPLLALTGSLTLT 175
TSE+F+GYVHGGYL+GIDTSKSLLE M+ Q+ LL+PLLA T SLTLT
Sbjct: 407 TSEKFSGYVHGGYLAGIDTSKSLLEEMK---------QSLLLQPLLAFTESLTLT 452
>AT1G62830.1 | Symbols: LDL1, SWP1, ATSWP1 | LDL1 (LSD1-LIKE1);
amine oxidase/ electron carrier/ oxidoreductase |
chr1:23264638-23267172 REVERSE
Length = 844
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 15 RRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGPN---I 71
R ++ F+ + ++ G +LV + ++R E S +++K +++LR ++ P +
Sbjct: 572 RGEFFLFYSY--SSVSGGPLLVALVAGDAAERFETLSPTDSVKRVLQILRGIYHPKGIVV 629
Query: 72 PNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVG--RIFFTGEHTSERFNGYV 129
P+ L RW ++F GSYS + S+ + VG R+FF GE T+ ++ +
Sbjct: 630 PDPVQALCSRWGQDKFSYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNRQYPATM 689
Query: 130 HGGYLSGIDTSKSLLEVMR 148
HG +LSG+ + ++L V R
Sbjct: 690 HGAFLSGMREAANILRVAR 708
>AT3G10390.1 | Symbols: FLD | FLD (FLOWERING LOCUS D); amine
oxidase/ electron carrier/ oxidoreductase |
chr3:3229293-3232345 FORWARD
Length = 884
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 18 YYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGP---NIPNA 74
++ F+ + A G +L+ + + + E + + + +LR ++ P N+P+
Sbjct: 491 FFLFYSYAPVA--GGALLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDP 548
Query: 75 TDILVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVG--RIFFTGEHTSERFNGYVHGG 132
+ RW + F GSYSN + ++ + VG R+FF GE T+ R+ +HG
Sbjct: 549 LQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGA 608
Query: 133 YLSGIDTSKSLLEVMREEKGRK 154
+++G+ + ++ + + RK
Sbjct: 609 FVTGLREAANMAQSAKARGIRK 630
>AT3G13682.1 | Symbols: LDL2 | LDL2 (LSD1-LIKE2); amine oxidase/
electron carrier/ oxidoreductase | chr3:4479193-4481509
REVERSE
Length = 746
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 15 RRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGPN---I 71
R ++ F+ + + G LV + ++R E L ++ LR ++GP +
Sbjct: 463 RGEFFLFYAY--HTVSGGPALVALVAGEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVV 520
Query: 72 PNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHDI--KSPVGRIFFTGEHTSERFNGYV 129
P+ + RW ++ GSYS+ + S+ V +DI +S R+FF GE T+ + +
Sbjct: 521 PDPIQTVCTRWGSDPLSYGSYSHVRVGSSG-VDYDILAESVSNRLFFAGEATTRQHPATM 579
Query: 130 HGGYLSGIDTSKSLLEV 146
HG YLSG+ + +L V
Sbjct: 580 HGAYLSGLREASKILHV 596
>AT2G43020.1 | Symbols: ATPAO2 | ATPAO2 (Polyamine oxidase 2); amine
oxidase/ electron carrier/ oxidoreductase |
chr2:17891945-17894440 FORWARD
Length = 490
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 9/172 (5%)
Query: 4 PEKEFFIYAHERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVL 63
P+ EF E +++ ++ A G +LV +K +E SDE A+ L
Sbjct: 320 PKVEFLGVVAETSYGCSYFLNLHKA-TGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQL 378
Query: 64 RDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHD-IKSPVGRIFFTGEHTS 122
+ + +P LV RW ++ GSYS Y I+ L++ ++ PV +FF GE TS
Sbjct: 379 QRILPDALP-PVQYLVSRWGSDVNSMGSYS-YDIVGKPHDLYERLRVPVDNLFFAGEATS 436
Query: 123 ERFNGYVHGGYLSGIDTSKSLLEVMREEKGRKNESQTFLLEPLLALTGSLTL 174
F G VHG Y +G+ ++ + E G + L +P++ G ++
Sbjct: 437 SSFPGSVHGAYSTGLMAAEDCRMRVLERYGELD-----LFQPVMGEEGPASV 483
>AT1G65840.1 | Symbols: ATPAO4, PAO4 | ATPAO4 (ARABIDOPSIS THALIANA
POLYAMINE OXIDASE 4); amine oxidase/ polyamine oxidase |
chr1:24490173-24492728 FORWARD
Length = 497
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 31 GSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGPNIPNATDILVPRWWNNRFQRG 90
G +LV ++ +E SDE T M L+ MF P+ P+ LV RW + G
Sbjct: 348 GHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMF-PDAPDPAQYLVTRWGTDPNTLG 406
Query: 91 SYSNYPIISNNQVLH-DIKSPVGRIFFTGEHTSERFNGYVHGGYLSGIDTSKSLLEVMRE 149
Y+ Y ++ + L+ + PV IFF GE + G HG +L+G+ S++ + E
Sbjct: 407 CYA-YDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIFE 465
Query: 150 EKGRKNESQTFLLEPLLALTGSLTLTQTEAV 180
G + + L++L G+ + +T V
Sbjct: 466 RLGAWEKLK------LVSLMGNSDILETATV 490
>AT3G59050.1 | Symbols: ATPAO3 | ATPAO3 (Polyamine oxidase 3);
polyamine oxidase | chr3:21824932-21827173 REVERSE
Length = 488
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 4 PEKEFF-IYAHERRGYYTFWQ-HMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAME 61
P EF + A G F H ++P +LV ++ +E +SDE A
Sbjct: 321 PNVEFLGVVAETSYGCSYFLNLHKATSHP---VLVYMPAGQLARDIEKKSDEAAANFAFS 377
Query: 62 VLRDMFGPNIPNATDILVPRWWNNRFQRGSYSNYPIISNNQVLHD-IKSPVGRIFFTGEH 120
L+ + P+ + + LV RW ++ GSYS Y I++ L++ ++ P+ +FF GE
Sbjct: 378 QLQKIL-PDASSPINYLVSRWGSDINSLGSYS-YDIVNKPHDLYERLRVPLDNLFFAGEA 435
Query: 121 TSERFNGYVHGGYLSGI 137
TS + G VHG Y +G+
Sbjct: 436 TSSSYPGSVHGAYSTGV 452
>AT4G16310.1 | Symbols: LDL3 | LDL3 (LSD1-LIKE3); amine oxidase/
electron carrier/ oxidoreductase | chr4:9218636-9224764
FORWARD
Length = 1628
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 19 YTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDEETLKEAMEVLRDMFGPN-IPNATDI 77
+ FW + G+ +L+ + + +S E + AM VLR +FG + +P+
Sbjct: 977 FMFWNVKKTV--GAPVLIALVVGKAAFEYTNKSKSEHVNHAMMVLRKLFGGDLVPDPVAS 1034
Query: 78 LVPRWWNNRFQRGSYSNYPIISNNQVLHDIKSPVGR-IFFTGEHTSERFNGYVHGGYLSG 136
+V W + + G+YS I ++ + + PV +FF GE T + V G ++G
Sbjct: 1035 VVTDWGTDPYSYGAYSYVAIGASGEDYDVLGRPVQNCLFFAGEATCKEHPDTVGGAMMTG 1094
Query: 137 IDTSKSLLEVMR 148
+ + +++++R
Sbjct: 1095 VREAVRIIDILR 1106