Jatropha Genome Database

JcCB0001411.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001411.30 + phase: 0 /partial
         (229 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32400.3 | Symbols: TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION...   125   2e-29
AT1G32400.2 | Symbols: TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION...   125   2e-29
AT1G32400.1 | Symbols: TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION...   125   2e-29
AT2G20740.2 | Symbols:  | unknown protein | chr2:8935911-8937292...    84   6e-17
AT2G20740.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    84   1e-16
AT4G28770.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    80   1e-15
AT2G20230.1 | Symbols:  | LOCATED IN: plasma membrane, vacuole; ...    76   2e-14

>AT1G32400.3 | Symbols: TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION
           2A); protein binding | chr1:11689393-11690873 REVERSE
          Length = 280

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 16/212 (7%)

Query: 29  YGIFCLVNWK----NDRESHSHNNSKKYEQIALPRALLAIEASSWLSNRLPVAWFIYLLL 84
           YGI+  V +K    N       N  + Y     P  L+A+  SS + + LP AWFIYL +
Sbjct: 28  YGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGRP-ILMAVSLSSNIFDNLPKAWFIYLFI 86

Query: 85  VIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNHNRQKDMPNDR 144
            IG +L VISC GCVG  +RS CCL  YS+LL+LL + +L  AAF+FF+++ + ++P+DR
Sbjct: 87  GIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWRDELPSDR 146

Query: 145 SGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLRYANRVNDYE----------R 194
           +G+F++ Y F   NWKI+RWV + A+  + +  ++AL +R AN   +Y+          +
Sbjct: 147 TGNFDTIYNFLRENWKIVRWVALGAVVFEALLFLLALMVRAANTPAEYDSDDEYLAPRQQ 206

Query: 195 IVYPEIVRPTAEKRGNPVAAATSTGRKEQTRP 226
           I  P I R  A   G PV A T   R  ++ P
Sbjct: 207 IRQPFINRQAAPVTGVPV-APTLDQRPSRSDP 237


>AT1G32400.2 | Symbols: TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION
           2A); protein binding | chr1:11689393-11690873 REVERSE
          Length = 280

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 16/212 (7%)

Query: 29  YGIFCLVNWK----NDRESHSHNNSKKYEQIALPRALLAIEASSWLSNRLPVAWFIYLLL 84
           YGI+  V +K    N       N  + Y     P  L+A+  SS + + LP AWFIYL +
Sbjct: 28  YGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGRP-ILMAVSLSSNIFDNLPKAWFIYLFI 86

Query: 85  VIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNHNRQKDMPNDR 144
            IG +L VISC GCVG  +RS CCL  YS+LL+LL + +L  AAF+FF+++ + ++P+DR
Sbjct: 87  GIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWRDELPSDR 146

Query: 145 SGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLRYANRVNDYE----------R 194
           +G+F++ Y F   NWKI+RWV + A+  + +  ++AL +R AN   +Y+          +
Sbjct: 147 TGNFDTIYNFLRENWKIVRWVALGAVVFEALLFLLALMVRAANTPAEYDSDDEYLAPRQQ 206

Query: 195 IVYPEIVRPTAEKRGNPVAAATSTGRKEQTRP 226
           I  P I R  A   G PV A T   R  ++ P
Sbjct: 207 IRQPFINRQAAPVTGVPV-APTLDQRPSRSDP 237


>AT1G32400.1 | Symbols: TOM2A | TOM2A (TOBAMOVIRUS MULTIPLICATION
           2A); protein binding | chr1:11689393-11690873 REVERSE
          Length = 280

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 16/212 (7%)

Query: 29  YGIFCLVNWK----NDRESHSHNNSKKYEQIALPRALLAIEASSWLSNRLPVAWFIYLLL 84
           YGI+  V +K    N       N  + Y     P  L+A+  SS + + LP AWFIYL +
Sbjct: 28  YGIYLFVEYKRVTDNSVTFDLTNGDQSYVSFGRP-ILMAVSLSSNIFDNLPKAWFIYLFI 86

Query: 85  VIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNHNRQKDMPNDR 144
            IG +L VISC GCVG  +RS CCL  YS+LL+LL + +L  AAF+FF+++ + ++P+DR
Sbjct: 87  GIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIFFDNSWRDELPSDR 146

Query: 145 SGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLRYANRVNDYE----------R 194
           +G+F++ Y F   NWKI+RWV + A+  + +  ++AL +R AN   +Y+          +
Sbjct: 147 TGNFDTIYNFLRENWKIVRWVALGAVVFEALLFLLALMVRAANTPAEYDSDDEYLAPRQQ 206

Query: 195 IVYPEIVRPTAEKRGNPVAAATSTGRKEQTRP 226
           I  P I R  A   G PV A T   R  ++ P
Sbjct: 207 IRQPFINRQAAPVTGVPV-APTLDQRPSRSDP 237


>AT2G20740.2 | Symbols:  | unknown protein | chr2:8935911-8937292
           FORWARD
          Length = 180

 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 67/110 (60%)

Query: 75  PVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNH 134
           PV WFIY  L +GA L V++C G + A T + CCL  Y   +VLL + +    A +F N 
Sbjct: 12  PVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNR 71

Query: 135 NRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLR 184
           + +KD P D SG+F+   +F   N+KI +W+ ++ + ++ + +++A+ L+
Sbjct: 72  DWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLK 121


>AT2G20740.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system, integral to membrane; EXPRESSED IN:
           23 plant structures; EXPRESSED DURING: 15 growth stages;
           CONTAINS InterPro DOMAIN/s: Tetraspanin
           (InterPro:IPR018499); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G20230.1); Has 91
           Blast hits to 91 proteins in 11 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr2:8935788-8937292 FORWARD
          Length = 221

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 67/110 (60%)

Query: 75  PVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNH 134
           PV WFIY  L +GA L V++C G + A T + CCL  Y   +VLL + +    A +F N 
Sbjct: 53  PVPWFIYSFLGLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNR 112

Query: 135 NRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLR 184
           + +KD P D SG+F+   +F   N+KI +W+ ++ + ++ + +++A+ L+
Sbjct: 113 DWKKDFPEDPSGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLK 162


>AT4G28770.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           LOCATED IN: plasma membrane, vacuole, membrane;
           EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin
           (InterPro:IPR018499); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT2G20230.1); Has 94
           Blast hits to 94 proteins in 12 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr4:14212177-14213518 REVERSE
          Length = 281

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 74  LPVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFN 133
           LP  WFIY  + IG  + +++  G + A   + CCLC YS+L  LL I +     F+  +
Sbjct: 106 LPAPWFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVID 165

Query: 134 HNRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLRYANRVNDYE 193
            + +KD+P D +G  NS   F   N  I +WV I  +A++++ L++AL LR        E
Sbjct: 166 RHWEKDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAMVSPRQSE 225

Query: 194 RIVYPEIVRPTAEKRGN---PVAAATSTG 219
                +   P +  R N   P A  TS+G
Sbjct: 226 LDDEDDFENPMSRARDNLLGPQANQTSSG 254


>AT2G20230.1 | Symbols:  | LOCATED IN: plasma membrane, vacuole;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16
           growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin
           (InterPro:IPR018499); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT4G28770.1); Has 91
           Blast hits to 91 proteins in 12 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90;
           Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
           | chr2:8725762-8727388 FORWARD
          Length = 270

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 65/111 (58%)

Query: 74  LPVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFN 133
           LP  WFIY  + +G  + +++  G + A   + CCLC YS+L  LL + +    A++  +
Sbjct: 95  LPAPWFIYSFMAVGILVCIVTFIGFIAAEAINGCCLCFYSILKTLLILLEAALVAYIAID 154

Query: 134 HNRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLR 184
            + +KD+P D +G  +S   F   N  I +WV IA +A++++ L++A+ LR
Sbjct: 155 RHWEKDLPYDPTGELSSLRAFIEENIDICKWVGIAVVAVQLLSLLLAMVLR 205