Jatropha Genome Database

JcCB0001101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001101.20 + phase: 0 
         (78 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10860.1 | Symbols:  | ubiquinol-cytochrome C reductase compl...    99   5e-22
AT5G05370.1 | Symbols:  | ubiquinol-cytochrome C reductase compl...    94   2e-20

>AT3G10860.1 | Symbols:  | ubiquinol-cytochrome C reductase
          complex ubiquinone-binding protein, putative /
          ubiquinol-cytochrome C reductase complex 8.2 kDa
          protein, putative | chr3:3399815-3400514 FORWARD
          Length = 72

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 49/51 (96%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGKQPV++KAVVYALSPFQQKIM GLWKDLP KIHHKVSENWISATLL+TP
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTP 51


>AT5G05370.1 | Symbols:  | ubiquinol-cytochrome C reductase
          complex ubiquinone-binding protein, putative /
          ubiquinol-cytochrome C reductase complex 8.2 kDa
          protein, putative | chr5:1590977-1591869 REVERSE
          Length = 72

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query: 1  MGKQPVRMKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MGKQPV++KAVVYALSPFQQKIM GLWKDLP KIHHKVSENWIS  LL+ P
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAP 51