Jatropha Genome Database
- JcCB0001101.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0001101.10 + phase: 0 /partial
(281 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.2 | Symbols: | KH domain-containing protein | chr2:16... 404 e-113
AT2G38610.1 | Symbols: | KH domain-containing protein | chr2:16... 404 e-113
AT3G08620.1 | Symbols: | KH domain-containing protein | chr3:26... 386 e-108
AT4G26480.1 | Symbols: | KH domain-containing protein | chr4:13... 280 6e-76
AT5G56140.1 | Symbols: | KH domain-containing protein | chr5:22... 276 8e-75
AT1G09660.1 | Symbols: | KH domain-containing quaking protein, ... 253 1e-67
AT1G09660.2 | Symbols: | KH domain-containing quaking protein, ... 206 2e-53
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 99 3e-21
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 99 3e-21
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 99 3e-21
>AT2G38610.2 | Symbols: | KH domain-containing protein |
chr2:16147552-16149638 REVERSE
Length = 286
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/286 (72%), Positives = 238/286 (83%), Gaps = 7/286 (2%)
Query: 1 MSGLY--AQNFSPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQE 58
MSGLY + FSPAR SP IR+TP+++S QYLTELL EHQKL PF +VLPICSRLLNQE
Sbjct: 1 MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60
Query: 59 ILRVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERL-GSQGINM 117
+ RVSGM+ NQG DFDR + S + MASS+++ N TG GWNGL ERL G+ G+ M
Sbjct: 61 MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMTM 120
Query: 118 DWQAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGK 177
DWQ AP SPS+Y VK+ILRL+IPVD+YPNFNFVGRLLGPRGNSLKRVEA+TGCRV+IRGK
Sbjct: 121 DWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGK 180
Query: 178 GSIKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQ 237
GSIKDPEKE+ LRGRPGYEHL++ LHILIE +LP +I++++LRQAQEIIEELLKPVDESQ
Sbjct: 181 GSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQ 240
Query: 238 DIYKRQQLRELAMLNS-NYREESPRPS--GSISPFTSSGMKRAKTG 280
D KRQQLRELA+LNS N REESP PS GS+SPF SSG KR KTG
Sbjct: 241 DFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285
>AT2G38610.1 | Symbols: | KH domain-containing protein |
chr2:16147552-16149638 REVERSE
Length = 286
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/286 (72%), Positives = 238/286 (83%), Gaps = 7/286 (2%)
Query: 1 MSGLY--AQNFSPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQE 58
MSGLY + FSPAR SP IR+TP+++S QYLTELL EHQKL PF +VLPICSRLLNQE
Sbjct: 1 MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60
Query: 59 ILRVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERL-GSQGINM 117
+ RVSGM+ NQG DFDR + S + MASS+++ N TG GWNGL ERL G+ G+ M
Sbjct: 61 MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMTM 120
Query: 118 DWQAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGK 177
DWQ AP SPS+Y VK+ILRL+IPVD+YPNFNFVGRLLGPRGNSLKRVEA+TGCRV+IRGK
Sbjct: 121 DWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGK 180
Query: 178 GSIKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQ 237
GSIKDPEKE+ LRGRPGYEHL++ LHILIE +LP +I++++LRQAQEIIEELLKPVDESQ
Sbjct: 181 GSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQ 240
Query: 238 DIYKRQQLRELAMLNS-NYREESPRPS--GSISPFTSSGMKRAKTG 280
D KRQQLRELA+LNS N REESP PS GS+SPF SSG KR KTG
Sbjct: 241 DFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285
>AT3G08620.1 | Symbols: | KH domain-containing protein |
chr3:2617925-2620314 FORWARD
Length = 283
Score = 386 bits (992), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/284 (70%), Positives = 240/284 (84%), Gaps = 4/284 (1%)
Query: 1 MSGLY-AQNFSPARTLSPHIRT-TPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQE 58
MSGLY NFSP+R SP IRT + DV+S QY+++LL EHQKLGPF +VLPICSRLLNQE
Sbjct: 1 MSGLYNYNNFSPSRAASPQIRTPSSDVDS-QYISQLLAEHQKLGPFMQVLPICSRLLNQE 59
Query: 59 ILRVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGS-QGINM 117
I R++GM+PNQG +DFDR + S + MAS +++ N G G GWNGL ER+G G+ M
Sbjct: 60 IFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMAM 119
Query: 118 DWQAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGK 177
+WQ APASPS+Y VK+ILRLD+PVD+YPNFNFVGRLLGPRGNSLKRVEA+TGCRVYIRGK
Sbjct: 120 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179
Query: 178 GSIKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQ 237
GSIKDPEKEE L+G+PGYEHL++ LHILIE +LP++I+D++LRQAQEIIEEL+KPVDESQ
Sbjct: 180 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 239
Query: 238 DIYKRQQLRELAMLNSNYREESPRPSGSISPFTSSGMKRAKTGQ 281
D KRQQLRELA+LNSN RE SP PSGS+SPF S+ MKR KTG+
Sbjct: 240 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283
>AT4G26480.1 | Symbols: | KH domain-containing protein |
chr4:13372885-13378390 REVERSE
Length = 555
Score = 280 bits (717), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 151/265 (56%), Positives = 189/265 (71%), Gaps = 10/265 (3%)
Query: 19 IRTTPD--VESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILRVSGMLPNQ-GLSDFD 75
+R+ P VE +YL+ELL E KL PF VLP RL+NQEILRV+ +L N S FD
Sbjct: 295 LRSQPSFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENALSQSRFD 354
Query: 76 RPQRGSLNLMASSDILPNNRGTGFLGW-NGLQNERLGSQGINMDWQAAPASPSAYIVKKI 134
P + +AS I N+R GW + +ER S +W +P S S IVK+
Sbjct: 355 HP-----SPLASGGIFQNSRAD-MNGWASQFPSERSVSSSPAPNWLNSPGSSSGLIVKRT 408
Query: 135 LRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKEESLRGRPG 194
+R+DIPVD YPN+NFVGRLLGPRGNSLKRVEAST CRV IRG+GSIKDP KE+ +RG+PG
Sbjct: 409 IRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPG 468
Query: 195 YEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSN 254
YEHL++PLHIL+E ELP+ I+D +L QA+EI+++LL PV+E+ D YK+QQLRELA+LN +
Sbjct: 469 YEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGS 528
Query: 255 YREESPRPSGSISPFTSSGMKRAKT 279
REE SGSISP+ S GMKRAKT
Sbjct: 529 LREEGSPMSGSISPYNSLGMKRAKT 553
>AT5G56140.1 | Symbols: | KH domain-containing protein |
chr5:22725462-22727932 FORWARD
Length = 315
Score = 276 bits (707), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 147/259 (56%), Positives = 182/259 (70%), Gaps = 10/259 (3%)
Query: 25 VESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILRVSGMLPNQGL---SDFDRPQRGS 81
VE +YL+ELL E KL PF VLP RLLNQEILRV+ +L N + S D P
Sbjct: 60 VEQEKYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDHPSP-- 117
Query: 82 LNLMASSDILPNNRGTGFLGW-NGLQNERLGSQGINMDWQAAPASPSAYIVKKILRLDIP 140
+AS I N R GW + +ER +W +P S S I K+ +R+DIP
Sbjct: 118 ---LASGGIFQNARAD-MNGWASQFPSERSVPSSPGPNWLNSPGSSSGLIAKRTIRVDIP 173
Query: 141 VDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKEESLRGRPGYEHLSD 200
VD+YPNFNFVGRLLGPRGNSLKRVEAST CRV IRG+GSIKDP KEE +RG+PGYEHL++
Sbjct: 174 VDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNE 233
Query: 201 PLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSNYREESP 260
PLHIL+E ELP+ I+D +L QA+EI+++LL P++E+ D+YK+QQLRELA+LN REE
Sbjct: 234 PLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGS 293
Query: 261 RPSGSISPFTSSGMKRAKT 279
SGS+SP+ S GMKRAKT
Sbjct: 294 PMSGSVSPYNSLGMKRAKT 312
>AT1G09660.1 | Symbols: | KH domain-containing quaking protein,
putative | chr1:3128032-3130791 REVERSE
Length = 298
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/278 (51%), Positives = 179/278 (64%), Gaps = 26/278 (9%)
Query: 16 SPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILRVSGMLPNQGLSDFD 75
SP+ P + +YLTELL+E QKLGPF +V+P C RLLN EI RVS D D
Sbjct: 31 SPNRSPCPPSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS------FPDLD 84
Query: 76 RPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGS-------QGIN-MDWQAAPASPS 127
R + GS S P N GW+ +Q E +G + + W P P+
Sbjct: 85 RYEHGS---PFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPN 141
Query: 128 AYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKEE 187
IVKK++RLD+PVD YP++NFVGR+LGPRGNSLKRVE +T CRV+IRG+GS+KD KEE
Sbjct: 142 PPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEE 201
Query: 188 SLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKRQQLRE 247
L+G+PGYEHL +PLH+LIE ELP +II+ +L A +E LLKP+DES D YKR+QL+E
Sbjct: 202 KLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKE 261
Query: 248 LAMLNSNYREESPRP------SGSISPFTSSGMKRAKT 279
LA LN REESP P S S+SPF S KRAKT
Sbjct: 262 LAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296
>AT1G09660.2 | Symbols: | KH domain-containing quaking protein,
putative | chr1:3128205-3130791 REVERSE
Length = 264
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 146/229 (63%), Gaps = 17/229 (7%)
Query: 16 SPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILRVSGMLPNQGLSDFD 75
SP+ P + +YLTELL+E QKLGPF +V+P C RLLN EI RVS D D
Sbjct: 31 SPNRSPCPPSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS------FPDLD 84
Query: 76 RPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGS-------QGIN-MDWQAAPASPS 127
R + GS S P N GW+ +Q E +G + + W P P+
Sbjct: 85 RYEHGS---PFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPN 141
Query: 128 AYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKEE 187
IVKK++RLD+PVD YP++NFVGR+LGPRGNSLKRVE +T CRV+IRG+GS+KD KEE
Sbjct: 142 PPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEE 201
Query: 188 SLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDES 236
L+G+PGYEHL +PLH+LIE ELP +II+ +L A +E LLKP+ S
Sbjct: 202 KLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMVHS 250
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 11/136 (8%)
Query: 126 PSAYIVKKILR-LDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKD-- 182
P+ Y K+ + L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+
Sbjct: 233 PADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 292
Query: 183 PEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKR 242
++++ L+ P ++ LH+L+E E L A ++E+LL+PVDE + +KR
Sbjct: 293 HQQKKDLKYDPSE---NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKR 344
Query: 243 QQLRELAMLNSNYREE 258
QQLRELA LN R+E
Sbjct: 345 QQLRELATLNGTIRDE 360
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 11/136 (8%)
Query: 126 PSAYIVKKILR-LDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKD-- 182
P+ Y K+ + L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+
Sbjct: 233 PADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 292
Query: 183 PEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKR 242
++++ L+ P ++ LH+L+E E L A ++E+LL+PVDE + +KR
Sbjct: 293 HQQKKDLKYDPSE---NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKR 344
Query: 243 QQLRELAMLNSNYREE 258
QQLRELA LN R+E
Sbjct: 345 QQLRELATLNGTIRDE 360
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 804
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 87/136 (63%), Gaps = 11/136 (8%)
Query: 126 PSAYIVKKILR-LDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKD-- 182
P+ Y K+ + L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+
Sbjct: 233 PADYRPPKLHKKLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 292
Query: 183 PEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKR 242
++++ L+ P ++ LH+L+E E L A ++E+LL+PVDE + +KR
Sbjct: 293 HQQKKDLKYDPSE---NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKR 344
Query: 243 QQLRELAMLNSNYREE 258
QQLRELA LN R+E
Sbjct: 345 QQLRELATLNGTIRDE 360