Jatropha Genome Database

JcCB0000571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.10 + phase: 2 /TE/partial
         (245 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   117   7e-27
ATMG00810.1 | Symbols: ORF240B | hypothetical protein | chrM:227...    74   1e-13

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 3/177 (1%)

Query: 15  YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGE 74
           Y   +G LMY L  TR DI+ +V  +S+F   P   H  AV  I  Y++GT    L +  
Sbjct: 378 YRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436

Query: 75  EKPV-LVGYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTE 133
           +  + L  ++DA      D+R+ST+GY +      +SW+S+ Q+ V+ S+ EAE+ AL+ 
Sbjct: 437 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496

Query: 134 ACKELLWMKKFLNELGIHQER-YLIFCDSQSAIHLGKNSSFHSRSKHIDVRYHWIRD 189
           A  E++W+ +F  EL +   +  L+FCD+ +AIH+  N+ FH R+KHI+   H +R+
Sbjct: 497 ATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553


>ATMG00810.1 | Symbols: ORF240B | hypothetical protein |
           chrM:227709-228431 REVERSE
          Length = 240

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 2/127 (1%)

Query: 15  YASAVGSLMYALVCTRPDIAHSVGVVSRFLSNPGKEHWAAVKWIFRYLRGTTKVCLCFGE 74
           + S VG+L Y L  TRPDI+++V +V + +  P    +  +K + RY++GT    L   +
Sbjct: 100 FRSIVGALQY-LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 158

Query: 75  EKPVLV-GYTDADMAGDVDSRKSTSGYLITFAGGAVSWQSRLQKCVALSTTEAEFIALTE 133
              + V  + D+D AG   +R+ST+G+        +SW ++ Q  V+ S+TE E+ AL  
Sbjct: 159 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 218

Query: 134 ACKELLW 140
              EL W
Sbjct: 219 TAAELTW 225