Jatropha Genome Database

JcCA0317741.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.40 - phase: 0 /partial
         (65 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76510.2 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...   119   4e-28
AT1G76510.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...   119   4e-28
AT1G20910.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...   114   2e-26
AT2G17410.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-contain...   100   2e-22

>AT1G76510.2 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr1:28708927-28712498 REVERSE
          Length = 434

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI GQPEQLDNPWGITPFKKVV+ P+RIDPL TSAVVSLHGRL+VRVPF
Sbjct: 373 VRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLHTSAVVSLHGRLFVRVPF 432

Query: 61  ER 62
           E+
Sbjct: 433 EQ 434


>AT1G76510.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr1:28708927-28712498 REVERSE
          Length = 434

 Score =  119 bits (298), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI GQPEQLDNPWGITPFKKVV+ P+RIDPL TSAVVSLHGRL+VRVPF
Sbjct: 373 VRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLHTSAVVSLHGRLFVRVPF 432

Query: 61  ER 62
           E+
Sbjct: 433 EQ 434


>AT1G20910.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr1:7277209-7280635 REVERSE
          Length = 398

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 59/62 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VR+QSDPAG++VITGQPEQLDNPWGITPFKK+V L +RIDPL TSAV+S+HGRL++RVPF
Sbjct: 337 VRIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDPLHTSAVMSMHGRLFIRVPF 396

Query: 61  ER 62
           E+
Sbjct: 397 EQ 398


>AT2G17410.1 | Symbols:  | ARID/BRIGHT DNA-binding domain-containing
           protein | chr2:7559869-7563474 FORWARD
          Length = 786

 Score =  100 bits (249), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI+G+PE   NPWG TPFKKVVSLP+RIDP  TSAVV+L+G+L+VRVP 
Sbjct: 723 VRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAVVTLNGQLFVRVPL 782

Query: 61  ER 62
           E+
Sbjct: 783 EQ 784