Jatropha Genome Database

JcCA0317741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.20 + phase: 0 
         (96 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33585.1 | Symbols:  | unknown protein | chr2:14223403-142241...   148   6e-37

>AT2G33585.1 | Symbols:  | unknown protein | chr2:14223403-14224167
           REVERSE
          Length = 193

 Score =  148 bits (374), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 77/93 (82%)

Query: 1   MSSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERXXX 60
           M+S+WRR++GNVRSFIGNSMGGLRGG + ASWVVAGT+AYFLW+KP QDLK+EQ+ R   
Sbjct: 98  MASSWRRSIGNVRSFIGNSMGGLRGGQSAASWVVAGTIAYFLWIKPEQDLKKEQEARAAL 157

Query: 61  XXXDPYRYVEKRKPIPDPQETGLIYGNKNKTKK 93
              D  +YVEKRKPI DPQ TGLIYGNKN T K
Sbjct: 158 AMADTNQYVEKRKPIADPQVTGLIYGNKNGTDK 190