Jatropha Genome Database

JcCA0317741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.10 + phase: 1 /partial
         (195 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76490.1 | Symbols: HMG1, HMGR1 | HMG1 (HYDROXY METHYLGLUTARY...   320   3e-88
AT2G17370.1 | Symbols: HMG2, HMGR2 | HMG2 (3-HYDROXY-3-METHYLGLU...   286   6e-78

>AT1G76490.1 | Symbols: HMG1, HMGR1 | HMG1 (HYDROXY METHYLGLUTARYL
           COA REDUCTASE 1); hydroxymethylglutaryl-CoA reductase |
           chr1:28695801-28698206 FORWARD
          Length = 642

 Score =  320 bits (821), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 154/191 (80%), Positives = 170/191 (89%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           N+CSDKKPAAVNWIEGRGKSVVCEA+I+ E+V  VLKT+VA+LVELNMLKN         
Sbjct: 442 NFCSDKKPAAVNWIEGRGKSVVCEAVIRGEIVNKVLKTSVAALVELNMLKNLAGSAVAGS 501

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAHA NIVSA+FIATGQDPAQN+ESS CITMMEA+NDGKD+H+SV+MPSIEVGTVG
Sbjct: 502 LGGFNAHASNIVSAVFIATGQDPAQNVESSQCITMMEAINDGKDIHISVTMPSIEVGTVG 561

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQLASQSACLNLLGVKGAS ESPG N+R LATIVAG+VLAGELSLMSAIAAGQLV SH
Sbjct: 562 GGTQLASQSACLNLLGVKGASTESPGMNARRLATIVAGAVLAGELSLMSAIAAGQLVRSH 621

Query: 181 MKYNRSSKDVS 191
           MKYNRSS+D+S
Sbjct: 622 MKYNRSSRDIS 632


>AT2G17370.1 | Symbols: HMG2, HMGR2 | HMG2
           (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2);
           hydroxymethylglutaryl-CoA reductase |
           chr2:7550007-7551981 FORWARD
          Length = 562

 Score =  286 bits (732), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 160/190 (84%), Gaps = 2/190 (1%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           NYCSDKK +AVNWIEGRGK VVCEA IK E+V+ VLKT+V +LVELN LKN         
Sbjct: 367 NYCSDKKASAVNWIEGRGKHVVCEAFIKAEIVEKVLKTSVEALVELNTLKNLVGSAMAGS 426

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAH+ NIVSA+FIATGQDPAQN+ESSHC+TM+  + DG DLH+SVSMP IEVGTVG
Sbjct: 427 LGGFNAHSSNIVSAVFIATGQDPAQNVESSHCMTMI--LPDGDDLHISVSMPCIEVGTVG 484

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQLASQ+ACLNLLGVKG++ E PGSN++ LA IVAGSVLAGELSLMSAIAAGQLV SH
Sbjct: 485 GGTQLASQAACLNLLGVKGSNNEKPGSNAQQLARIVAGSVLAGELSLMSAIAAGQLVKSH 544

Query: 181 MKYNRSSKDV 190
           MKYNRSS+D+
Sbjct: 545 MKYNRSSRDI 554