Jatropha Genome Database

JcCA0317631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317631.10 - phase: 0 /partial/short
         (31 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23940.1 | Symbols:  | dehydratase family | chr3:8648780-8652...    60   4e-10

>AT3G23940.1 | Symbols:  | dehydratase family | chr3:8648780-8652323
           FORWARD
          Length = 608

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/29 (93%), Positives = 27/29 (93%)

Query: 1   MPGTIMAMGRLNRPSIMVYGGTIKPGHFN 29
           MPGTIMAMGRLNRP IMVYGGTIKPGHF 
Sbjct: 177 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQ 205