Jatropha Genome Database

JcCA0317481.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317481.20 - phase: 0 
         (100 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26810.2 | Symbols:  | SWIB complex BAF60b domain-containing ...   173   2e-44
AT4G26810.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   173   2e-44
AT2G35605.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    71   1e-13
AT1G31760.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    68   9e-13
AT4G34290.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    65   8e-12
AT2G14880.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    63   4e-11
AT3G03590.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    60   2e-10
AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    51   2e-07
AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    50   3e-07
AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    49   8e-07

>AT4G26810.2 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:13492247-13492649 REVERSE
          Length = 106

 Score =  173 bits (439), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 92/100 (92%)

Query: 1   MLPQQMKKAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
           MLPQ++KKAIT+NPKKL NLIDLVNLPSTLR FVGQSQISRLGCFMRVWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  KNKNIVNCDEKLKGILLGKPQVDLAELPALIKLHFPKGPK 100
           KNKN+V CDEKLK ILLGK +V+L +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100


>AT4G26810.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:13492247-13492649 REVERSE
          Length = 106

 Score =  173 bits (439), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 84/100 (84%), Positives = 92/100 (92%)

Query: 1   MLPQQMKKAITENPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDP 60
           MLPQ++KKAIT+NPKKL NLIDLVNLPSTLR FVGQSQISRLGCFMRVWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  KNKNIVNCDEKLKGILLGKPQVDLAELPALIKLHFPKGPK 100
           KNKN+V CDEKLK ILLGK +V+L +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100


>AT2G35605.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr2:14946161-14947027 FORWARD
          Length = 109

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 6   MKKAITENPKKLA----NLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPK 61
           M KA +    K       ++ +V +   L  F+G++++SR     ++W YIK NNLQ+P 
Sbjct: 12  MAKAASSTGAKTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPV 71

Query: 62  NKNIVNCDEKLKGILLGKPQVDLAELPALIKLHFPK 97
           NK  + CDE+LK I  GK  V   E+  L+  HFPK
Sbjct: 72  NKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPK 107


>AT1G31760.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:11372602-11373414 REVERSE
          Length = 112

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 44/68 (64%)

Query: 30  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDLAELPA 89
           L  F G+ +++R     +VW Y+K +NLQ+P NK  ++CD+KLK I  GK +V + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 90  LIKLHFPK 97
           L+  HFPK
Sbjct: 103 LLSPHFPK 110


>AT4G34290.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:16410883-16412122 FORWARD
          Length = 144

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%)

Query: 30  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDLAELPA 89
           +++ VG  +I R     R+W+YIK ++LQDP+NK  + CDEKLK I  GK +V   E+  
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 90  LIKLHF 95
           LI  HF
Sbjct: 138 LIGPHF 143


>AT2G14880.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr2:6393686-6394841 REVERSE
          Length = 141

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 10/74 (13%)

Query: 22  DLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQ 81
           D+V LP          +I+R     R+W+YIK ++LQDP+NK  + CDEKLK I  G+ +
Sbjct: 77  DIVELP----------EIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 126

Query: 82  VDLAELPALIKLHF 95
           V   E+  LI  HF
Sbjct: 127 VGFLEIAKLIGPHF 140


>AT3G03590.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:865341-866669 REVERSE
          Length = 143

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 30  LREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDLAELPA 89
           L +F+G  + SR      +W+YIK+++LQ+P +K  + CDE LK I  GK +V   E+  
Sbjct: 74  LAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISK 133

Query: 90  LIKLHFPK 97
           L+  HF K
Sbjct: 134 LLSPHFVK 141


>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:18329736-18331691 FORWARD
          Length = 372

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 15  KKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKG 74
           KK      + +L   L+ F G  Q++R      +W YIK NNLQDP +K  + CDE L+ 
Sbjct: 246 KKGGGFTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRS 305

Query: 75  IL 76
           + 
Sbjct: 306 LF 307



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%)

Query: 23  LVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGIL 76
           +  L   L +F+G SQ++R     ++W+YI+ ++LQDP N+  + CDE L  + 
Sbjct: 105 ICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLF 158


>AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:6596082-6598667 FORWARD
          Length = 462

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 35  GQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQVDLAELPALIKL- 93
           G++ +SR     R+W YI  N+LQDP +K  V CDEKLK +     +VD  E  ++ KL 
Sbjct: 398 GENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELF----EVDSFEDTSVSKLL 453

Query: 94  --HFPKG 98
             HF K 
Sbjct: 454 TNHFIKA 460



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 12  ENPKKLAN--LIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCD 69
           E PK+        + +L   L+ F G ++++R      +W YIK NNLQDP +K  + CD
Sbjct: 254 EKPKRKGGGGFAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICD 313

Query: 70  EKLKGIL 76
           E  + + 
Sbjct: 314 ESFRSLF 320



 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 15  KKLANLIDLVNLPSTLREFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKG 74
           K+   +  +  L   L + VG SQ+ R     ++W+YI+  +LQDPK++  + CDE L  
Sbjct: 111 KRGGGITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDELLHS 170

Query: 75  IL 76
           + 
Sbjct: 171 LF 172


>AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:11807811-11809660 FORWARD
          Length = 385

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 24  VNLPSTLREF--VGQSQISRLGCFMRVWSYIKTNNLQDPKNKNIVNCDEKLKGILLGKPQ 81
           V L   L +F   G+++++      RVW YIK NNL+DP N   + CDEKL+  LLG   
Sbjct: 309 VTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRD-LLGCES 367

Query: 82  VDLAELPALIKLHFPK 97
           +    +  +++ H  K
Sbjct: 368 ISAVGINEMLRRHMYK 383