Jatropha Genome Database
- JcCA0317291.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0317291.30 + phase: 0 /partial
(379 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G05830.1 | Symbols: | eukaryotic translation initiation fact... 501 e-142
AT2G05830.4 | Symbols: | eukaryotic translation initiation fact... 436 e-122
AT2G05830.3 | Symbols: | eukaryotic translation initiation fact... 434 e-122
AT2G05830.2 | Symbols: | eukaryotic translation initiation fact... 434 e-122
AT3G07300.3 | Symbols: | eukaryotic translation initiation fact... 60 3e-09
AT3G07300.2 | Symbols: | eukaryotic translation initiation fact... 60 3e-09
AT3G07300.1 | Symbols: | eukaryotic translation initiation fact... 60 3e-09
AT1G72340.1 | Symbols: | eukaryotic translation initiation fact... 52 7e-07
AT1G53900.1 | Symbols: | GTP binding / translation initiation f... 52 9e-07
AT1G53880.1 | Symbols: | GTP binding / translation initiation f... 52 9e-07
>AT2G05830.1 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr2:2229759-2231839 FORWARD
Length = 374
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/345 (70%), Positives = 274/345 (79%)
Query: 12 EVSNTLQSICYKRGSLHLLDQRKLPLETEYLVIGDASDGWSAIREMVVRGXXXXXXXXXX 71
E TL++ICYK GSL LLDQRKLPLET YL I DASDGWSAI+EMVVRG
Sbjct: 4 EGDTTLKAICYKPGSLQLLDQRKLPLETIYLEIRDASDGWSAIQEMVVRGAPAIAIAAAL 63
Query: 72 XXXVEVFNLQDFNGTSDDAGSFLFQKLDYLVSSRPTAVNLSDAATKLKEVIXXXXXXXXX 131
VEVFN F+G++ DA +FL KLDYLVSSRPTAVNL+DAA KLK VI
Sbjct: 64 SLAVEVFNFHGFDGSASDAVAFLENKLDYLVSSRPTAVNLADAALKLKHVIAKALATATE 123
Query: 132 XXXVFQAYIEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERLSVLTHCNTGSLATAGY 191
+F+AYIEA+E MLEDDV SNKAIG+ G S ++ Q KN ++LSVLTHCNTGSLATAGY
Sbjct: 124 AKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCNTGSLATAGY 183
Query: 192 GTALGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDG 251
GTALGVIR+LHT G+LERAYCTETRPFNQG+RLTAFELVH+KIP LMKDG
Sbjct: 184 GTALGVIRALHTQGILERAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMKDG 243
Query: 252 RVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSIDLCLSSGNQIVIE 311
RV VIVGADRVA+NGDTANKIGTYSLALCA HH IPFYVAAPLTS+DL LSSG +IVIE
Sbjct: 244 RVDGVIVGADRVASNGDTANKIGTYSLALCAKHHGIPFYVAAPLTSVDLSLSSGKEIVIE 303
Query: 312 ERSPKELLNTRGGLGEQVAASGISIWNPAFDVTPANLISGIITEK 356
ERSPKEL++T GGLGE++AA GIS+WNPAFD+TPA LI+GIITEK
Sbjct: 304 ERSPKELMHTHGGLGERIAAPGISVWNPAFDMTPAELIAGIITEK 348
>AT2G05830.4 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr2:2229964-2231839 FORWARD
Length = 328
Score = 436 bits (1121), Expect = e-122, Method: Compositional matrix adjust.
Identities = 211/301 (70%), Positives = 238/301 (79%)
Query: 56 EMVVRGXXXXXXXXXXXXXVEVFNLQDFNGTSDDAGSFLFQKLDYLVSSRPTAVNLSDAA 115
EMVVRG VEVFN F+G++ DA +FL KLDYLVSSRPTAVNL+DAA
Sbjct: 2 EMVVRGAPAIAIAAALSLAVEVFNFHGFDGSASDAVAFLENKLDYLVSSRPTAVNLADAA 61
Query: 116 TKLKEVIXXXXXXXXXXXXVFQAYIEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERL 175
KLK VI +F+AYIEA+E MLEDDV SNKAIG+ G S ++ Q KN ++L
Sbjct: 62 LKLKHVIAKALATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKL 121
Query: 176 SVLTHCNTGSLATAGYGTALGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIP 235
SVLTHCNTGSLATAGYGTALGVIR+LHT G+LERAYCTETRPFNQG+RLTAFELVH+KIP
Sbjct: 122 SVLTHCNTGSLATAGYGTALGVIRALHTQGILERAYCTETRPFNQGSRLTAFELVHEKIP 181
Query: 236 XXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPL 295
LMKDGRV VIVGADRVA+NGDTANKIGTYSLALCA HH IPFYVAAPL
Sbjct: 182 ATLIADSAAAALMKDGRVDGVIVGADRVASNGDTANKIGTYSLALCAKHHGIPFYVAAPL 241
Query: 296 TSIDLCLSSGNQIVIEERSPKELLNTRGGLGEQVAASGISIWNPAFDVTPANLISGIITE 355
TS+DL LSSG +IVIEERSPKEL++T GGLGE++AA GIS+WNPAFD+TPA LI+GIITE
Sbjct: 242 TSVDLSLSSGKEIVIEERSPKELMHTHGGLGERIAAPGISVWNPAFDMTPAELIAGIITE 301
Query: 356 K 356
K
Sbjct: 302 K 302
>AT2G05830.3 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr2:2230057-2231839 FORWARD
Length = 326
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/300 (70%), Positives = 237/300 (79%)
Query: 57 MVVRGXXXXXXXXXXXXXVEVFNLQDFNGTSDDAGSFLFQKLDYLVSSRPTAVNLSDAAT 116
MVVRG VEVFN F+G++ DA +FL KLDYLVSSRPTAVNL+DAA
Sbjct: 1 MVVRGAPAIAIAAALSLAVEVFNFHGFDGSASDAVAFLENKLDYLVSSRPTAVNLADAAL 60
Query: 117 KLKEVIXXXXXXXXXXXXVFQAYIEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERLS 176
KLK VI +F+AYIEA+E MLEDDV SNKAIG+ G S ++ Q KN ++LS
Sbjct: 61 KLKHVIAKALATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLS 120
Query: 177 VLTHCNTGSLATAGYGTALGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPX 236
VLTHCNTGSLATAGYGTALGVIR+LHT G+LERAYCTETRPFNQG+RLTAFELVH+KIP
Sbjct: 121 VLTHCNTGSLATAGYGTALGVIRALHTQGILERAYCTETRPFNQGSRLTAFELVHEKIPA 180
Query: 237 XXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLT 296
LMKDGRV VIVGADRVA+NGDTANKIGTYSLALCA HH IPFYVAAPLT
Sbjct: 181 TLIADSAAAALMKDGRVDGVIVGADRVASNGDTANKIGTYSLALCAKHHGIPFYVAAPLT 240
Query: 297 SIDLCLSSGNQIVIEERSPKELLNTRGGLGEQVAASGISIWNPAFDVTPANLISGIITEK 356
S+DL LSSG +IVIEERSPKEL++T GGLGE++AA GIS+WNPAFD+TPA LI+GIITEK
Sbjct: 241 SVDLSLSSGKEIVIEERSPKELMHTHGGLGERIAAPGISVWNPAFDMTPAELIAGIITEK 300
>AT2G05830.2 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr2:2230057-2231839 FORWARD
Length = 326
Score = 434 bits (1115), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/300 (70%), Positives = 237/300 (79%)
Query: 57 MVVRGXXXXXXXXXXXXXVEVFNLQDFNGTSDDAGSFLFQKLDYLVSSRPTAVNLSDAAT 116
MVVRG VEVFN F+G++ DA +FL KLDYLVSSRPTAVNL+DAA
Sbjct: 1 MVVRGAPAIAIAAALSLAVEVFNFHGFDGSASDAVAFLENKLDYLVSSRPTAVNLADAAL 60
Query: 117 KLKEVIXXXXXXXXXXXXVFQAYIEAAEIMLEDDVASNKAIGSHGASFIKNQLKNIERLS 176
KLK VI +F+AYIEA+E MLEDDV SNKAIG+ G S ++ Q KN ++LS
Sbjct: 61 KLKHVIAKALATATEAKSIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLS 120
Query: 177 VLTHCNTGSLATAGYGTALGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPX 236
VLTHCNTGSLATAGYGTALGVIR+LHT G+LERAYCTETRPFNQG+RLTAFELVH+KIP
Sbjct: 121 VLTHCNTGSLATAGYGTALGVIRALHTQGILERAYCTETRPFNQGSRLTAFELVHEKIPA 180
Query: 237 XXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLT 296
LMKDGRV VIVGADRVA+NGDTANKIGTYSLALCA HH IPFYVAAPLT
Sbjct: 181 TLIADSAAAALMKDGRVDGVIVGADRVASNGDTANKIGTYSLALCAKHHGIPFYVAAPLT 240
Query: 297 SIDLCLSSGNQIVIEERSPKELLNTRGGLGEQVAASGISIWNPAFDVTPANLISGIITEK 356
S+DL LSSG +IVIEERSPKEL++T GGLGE++AA GIS+WNPAFD+TPA LI+GIITEK
Sbjct: 241 SVDLSLSSGKEIVIEERSPKELMHTHGGLGERIAAPGISVWNPAFDMTPAELIAGIITEK 300
>AT3G07300.3 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr3:2324967-2327380 REVERSE
Length = 409
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 209 RAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGD 268
R + E P QG L A ELV + ++ RV+ VI+GA V ANG
Sbjct: 238 RVFVAEGAPRYQG-HLLAKELVARGLQTTVITDSAVFAMIS--RVNMVIIGAHAVMANGG 294
Query: 269 TANKIGTYSLALCAMHHNIPFYVAAPLTSIDLC-LSSGNQIVI--EERSPKELLNTRGGL 325
+G AL A H +PF V A S LC L N V+ E RSP ELL+ G
Sbjct: 295 VIGPVGVNMAALAAQKHAVPFVVLA--GSHKLCPLYPHNPEVLLNELRSPSELLDF-GEF 351
Query: 326 GEQV---AASG-ISIWNPAFDVTPANLISGIITE 355
+ + A SG + + NP FD P NL+S IT+
Sbjct: 352 SDCLDFGAGSGSLQVVNPTFDYVPPNLVSLFITD 385
>AT3G07300.2 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr3:2324967-2327380 REVERSE
Length = 407
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 209 RAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGD 268
R + E P QG L A ELV + ++ RV+ VI+GA V ANG
Sbjct: 236 RVFVAEGAPRYQG-HLLAKELVARGLQTTVITDSAVFAMIS--RVNMVIIGAHAVMANGG 292
Query: 269 TANKIGTYSLALCAMHHNIPFYVAAPLTSIDLC-LSSGNQIVI--EERSPKELLNTRGGL 325
+G AL A H +PF V A S LC L N V+ E RSP ELL+ G
Sbjct: 293 VIGPVGVNMAALAAQKHAVPFVVLA--GSHKLCPLYPHNPEVLLNELRSPSELLDF-GEF 349
Query: 326 GEQV---AASG-ISIWNPAFDVTPANLISGIITE 355
+ + A SG + + NP FD P NL+S IT+
Sbjct: 350 SDCLDFGAGSGSLQVVNPTFDYVPPNLVSLFITD 383
>AT3G07300.1 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr3:2324967-2327380 REVERSE
Length = 407
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 209 RAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGD 268
R + E P QG L A ELV + ++ RV+ VI+GA V ANG
Sbjct: 236 RVFVAEGAPRYQG-HLLAKELVARGLQTTVITDSAVFAMIS--RVNMVIIGAHAVMANGG 292
Query: 269 TANKIGTYSLALCAMHHNIPFYVAAPLTSIDLC-LSSGNQIVI--EERSPKELLNTRGGL 325
+G AL A H +PF V A S LC L N V+ E RSP ELL+ G
Sbjct: 293 VIGPVGVNMAALAAQKHAVPFVVLA--GSHKLCPLYPHNPEVLLNELRSPSELLDF-GEF 349
Query: 326 GEQV---AASG-ISIWNPAFDVTPANLISGIITE 355
+ + A SG + + NP FD P NL+S IT+
Sbjct: 350 SDCLDFGAGSGSLQVVNPTFDYVPPNLVSLFITD 383
>AT1G72340.1 | Symbols: | eukaryotic translation initiation factor
2B family protein / eIF-2B family protein |
chr1:27236898-27238482 FORWARD
Length = 382
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 195 LGVIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVS 254
L ++++ + L R CTE RP G L++ EL IP M + V
Sbjct: 215 LEILKTAAQNNKLFRVLCTEGRPDGTGVLLSS-ELSKLDIPVKLLLDSAVAYSMDE--VD 271
Query: 255 AVIVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAA 293
V VGAD V +G N +GTY +AL A N P YVAA
Sbjct: 272 MVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAA 310
>AT1G53900.1 | Symbols: | GTP binding / translation initiation
factor | chr1:20127634-20130834 FORWARD
Length = 580
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 197 VIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAV 256
++++ + L R CTE RP G L A EL IP M + V V
Sbjct: 415 ILKTSAQNKKLFRVLCTEGRPDKTGV-LLANELAKLDIPVKLLIDSAVAYSMDE--VDMV 471
Query: 257 IVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAA 293
VGAD V +G N +GTY +AL A N P YVAA
Sbjct: 472 FVGADGVVESGGIINMMGTYQIALVAQSMNKPVYVAA 508
>AT1G53880.1 | Symbols: | GTP binding / translation initiation
factor | chr1:20115069-20118269 FORWARD
Length = 580
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 197 VIRSLHTDGVLERAYCTETRPFNQGARLTAFELVHDKIPXXXXXXXXXXXLMKDGRVSAV 256
++++ + L R CTE RP G L A EL IP M + V V
Sbjct: 415 ILKTSAQNKKLFRVLCTEGRPDKTGV-LLANELAKLDIPVKLLIDSAVAYSMDE--VDMV 471
Query: 257 IVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAA 293
VGAD V +G N +GTY +AL A N P YVAA
Sbjct: 472 FVGADGVVESGGIINMMGTYQIALVAQSMNKPVYVAA 508