Jatropha Genome Database

JcCA0317221.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317221.30 + phase: 1 /TE/partial
         (745 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00860.1 | Symbols: ORF158 | hypothetical protein | chrM:2359...    72   1e-12

>ATMG00860.1 | Symbols: ORF158 | hypothetical protein |
           chrM:235916-236392 FORWARD
          Length = 158

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)

Query: 583 IEHVRIVLQALRSEKLYAKLNKCTFCIDRLVFLGF--VVSAQGIEVDEEKVKAIKEWPTP 640
           + H+ +VLQ     + YA   KC F   ++ +LG   ++S +G+  D  K++A+  WP P
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 641 KSISEVRSFHGLASFYRRFVKDF 663
           K+ +E+R F GL  +YRRFVK++
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNY 83