Jatropha Genome Database

JcCA0317211.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317211.20 + phase: 0 /pseudo
         (243 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69980.1 | Symbols:  | unknown protein | chr1:26356559-263576...   157   7e-39

>AT1G69980.1 | Symbols:  | unknown protein | chr1:26356559-26357647
           REVERSE
          Length = 205

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 118/205 (57%), Gaps = 48/205 (23%)

Query: 39  GSRVLLVFKEKPEGSNLTFDCSPSGACVPCQYSEKTDEKYRCSETGYRIPLKCIETKDNI 98
           G R LL FKE P+GSN+TF CSPSG CV C  SEK  EKYRCSETGYRIP KC E ++ +
Sbjct: 43  GRRFLLGFKETPKGSNITFACSPSGPCVSCNSSEKRKEKYRCSETGYRIPFKCKEVREEV 102

Query: 99  ----KNGNDKKSQKTRSVIEISNENANPHAMLHDAASNEQRSLLDDSS-TLEDGSQAYIT 153
               KNG +          E  N+ +N     ++    + R+LLDDSS   +  SQ+Y T
Sbjct: 103 DAHKKNGEE----------ETQNDQSN-----NNDEEAKTRNLLDDSSPATKVKSQSYKT 147

Query: 154 YRSCIPPVNEEKLSVLGFEAFCEIAVFKNCLTECGYXCLAVNHDAQGIILCLFLISGSVV 213
           YRSC+P  +EEKLSVLGFE+                           I+L LFL+SG+ +
Sbjct: 148 YRSCVPSADEEKLSVLGFES---------------------------IMLGLFLLSGAAI 180

Query: 214 YFRRKQTVTMSGV-GGGRIQMNSRF 237
           Y R++QTV M GV   GR+Q NSRF
Sbjct: 181 YIRKRQTVPMLGVSSSGRLQGNSRF 205