Jatropha Genome Database

JcCA0317171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317171.10 + phase: 0 /pseudo/partial
         (575 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12400.1 | Symbols:  | PHD finger transcription factor, putat...    82   1e-15
AT5G35210.2 | Symbols:  | peptidase M50 family protein / sterol-...    52   8e-07
AT5G35210.1 | Symbols:  | peptidase M50 family protein / sterol-...    52   1e-06
AT5G22760.1 | Symbols:  | PHD finger family protein | chr5:75716...    50   5e-06

>AT5G12400.1 | Symbols:  | PHD finger transcription factor, putative |
            chr5:4013813-4020909 FORWARD
          Length = 1595

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 92/209 (44%), Gaps = 14/209 (6%)

Query: 180  KRGK---NIIRNAKVQHQKSKRTPSGCKSVLIKNNKKVXXXXXXXXXQKNKKVTIVVPLR 236
            KRG+   +  +   VQ QK K+  +  KS  +K  K           + +KKV    PLR
Sbjct: 1378 KRGRPPGSFRKKIGVQTQKRKKVIAARKSPRLKKTKTSMAERIAIRLKNHKKVVASKPLR 1437

Query: 237  RSPRKAKYN-SLQNXXXX---XXXXXXXXXXXXXXXXXXXXXTSFRKKRTENYHSYWLNG 292
            RS R+ K+   LQ+                             S RK RT+   +YWLNG
Sbjct: 1438 RSGRQLKHVIRLQDESKVPEGSKKRKLETKRGRGRPKKVKQEISIRKARTDRCLNYWLNG 1497

Query: 293  LFLSRKPGDERVMHFRSKKFLAPSESVSL--DQHKCPLCHEAGYTSTLNYISCEMCGEWF 350
            L LSRK G+ERV  F  +++  P E+     DQ KC LC      S   +ISCE+CG   
Sbjct: 1498 LLLSRKAGNERVHQFHRERYYVPLENSDSDHDQPKCHLCGSIESKSGSTFISCELCGGNP 1557

Query: 351  HGDAFGLNVEKSN-----RLIGFRCHVCR 374
              +   +++ +       RL  + C+VCR
Sbjct: 1558 FSELLLVHIARVGFFSLLRLFFWFCNVCR 1586


>AT5G35210.2 | Symbols:  | peptidase M50 family protein /
            sterol-regulatory element binding protein (SREBP) site 2
            protease family protein | chr5:13476213-13482238 REVERSE
          Length = 1409

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 292  GLFLSRKPGDERVMHFRSKKFLAP--SESVSLDQHKCPLCHEAGYTSTLNYISCEMCGEW 349
            G+   +K  ++  + FR++  L    S+  SL+   C +C    Y   L YI C  C +W
Sbjct: 1073 GVIWRKKNVEDTGVDFRNQNILLAGRSDKPSLEP-VCGICL-LPYNPGLTYIHCTKCEKW 1130

Query: 350  FHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFLRSHESETAQDQNDV-GNEFSEQANN 408
            FH +A  L   +   ++GF+C  CR+   P CP++     E  Q +  V  N+   Q N 
Sbjct: 1131 FHTEAVKLKDSQIPEVVGFKCCKCRRIRSPDCPYMDPKLKEQKQIKRIVFTNQKQRQGN- 1189

Query: 409  IPHLSGINLLEESLGKDEDQRDS 431
                SG++   E + + +D + S
Sbjct: 1190 ----SGLDSDSERMSEQKDSKPS 1208


>AT5G35210.1 | Symbols:  | peptidase M50 family protein /
            sterol-regulatory element binding protein (SREBP) site 2
            protease family protein | chr5:13474499-13482238 REVERSE
          Length = 1576

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)

Query: 292  GLFLSRKPGDERVMHFRSKKFLAP--SESVSLDQHKCPLCHEAGYTSTLNYISCEMCGEW 349
            G+   +K  ++  + FR++  L    S+  SL+   C +C    Y   L YI C  C +W
Sbjct: 1073 GVIWRKKNVEDTGVDFRNQNILLAGRSDKPSLEP-VCGICLLP-YNPGLTYIHCTKCEKW 1130

Query: 350  FHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCPFLRSHESETAQDQNDV-GNEFSEQANN 408
            FH +A  L   +   ++GF+C  CR+   P CP++     E  Q +  V  N+   Q N 
Sbjct: 1131 FHTEAVKLKDSQIPEVVGFKCCKCRRIRSPDCPYMDPKLKEQKQIKRIVFTNQKQRQGN- 1189

Query: 409  IPHLSGINLLEESLGKDEDQRDS 431
                SG++   E + + +D + S
Sbjct: 1190 ----SGLDSDSERMSEQKDSKPS 1208


>AT5G22760.1 | Symbols:  | PHD finger family protein |
            chr5:7571635-7577662 FORWARD
          Length = 1566

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 323  QHKCPLCHEAGYTSTLNYISCEMCGEWFHGDAFGLNVEKSNRLIGFRCHVCRKSTPPVCP 382
            Q  C +C +  Y   L YI C  C  W+H +A  L   K   ++GF+C  CR+   P CP
Sbjct: 1242 QPVCWIC-KLPYNPGLTYIHCTSCDMWYHIEAVKLEESKIPEVVGFKCCRCRRIRSPDCP 1300

Query: 383  FLRSHESETAQ 393
            ++     E  Q
Sbjct: 1301 YMDPKLKEQKQ 1311