Jatropha Genome Database

JcCA0317161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317161.20 - phase: 0 
         (459 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16200.1 | Symbols:  | unknown protein | chr3:5491619-5493605...   714   0.0  

>AT3G16200.1 | Symbols:  | unknown protein | chr3:5491619-5493605
           REVERSE
          Length = 456

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/459 (75%), Positives = 391/459 (85%), Gaps = 12/459 (2%)

Query: 2   HTLKHPLSPKTPTSASSKMLERVLSSRRASPHPDDAVSDNDTLPLSG-DESKTKKQSLSL 60
            +L H  SPKTPT+    ML+R LSSRR  PH D  +S +     SG DESKTK+  + L
Sbjct: 9   QSLWHSQSPKTPTT----MLDRALSSRR--PHSDADLSASGE---SGTDESKTKRPHIYL 59

Query: 61  LAANYLSRLSHXXXXXXXXXXXXXXXXXXXXXXXXFHSRNFVCVSPFDPAIRVGFFGLDG 120
           LA+N+LSR+ H                        FHS +FVC+S FDPA R+GFFGLDG
Sbjct: 60  LASNFLSRIGHQWWPCLILALLFLVLLFLISVA--FHSHSFVCISRFDPAARIGFFGLDG 117

Query: 121 LESDFGVLGVPCCRSKHGKKVEWTAKDLLKGLEEFVPIYETRPIKNNMYGMGFDHSFGLW 180
           LESDFG LGVP CRSKHGK+VEWT+KDLLKGLEEFVPIYETRPIKNNMYGMGFDHSFGLW
Sbjct: 118 LESDFGALGVPWCRSKHGKEVEWTSKDLLKGLEEFVPIYETRPIKNNMYGMGFDHSFGLW 177

Query: 181 FIARWLKPDLMIESGAFKGHSTWVLRQAMPDMPIISLSPRHPEKYLKKGPAYVDGNCTYF 240
           F+ARWLKPD+MIESGAFKGHSTWVLRQAMPD P+ISL+PRHPEKYL+KGPAYVDGNCTYF
Sbjct: 178 FMARWLKPDMMIESGAFKGHSTWVLRQAMPDTPMISLTPRHPEKYLRKGPAYVDGNCTYF 237

Query: 241 AGKDFVDFGSVEWKSVMKKHGITDLSRVLIFFDDHQNELKRVRQALSAGFRHLVFEDNYD 300
           AGKDFVDFGSV+WK+V++KHGITDLSRV++FFDDHQNELKR++QAL AGFRHL+FEDNYD
Sbjct: 238 AGKDFVDFGSVDWKNVLRKHGITDLSRVIVFFDDHQNELKRLKQALKAGFRHLIFEDNYD 297

Query: 301 TGTGDHYSLRQICDQSYIRGGGHSCFRDSDESRIRSKRKKFWEKAVDVDELCGPNEAWWG 360
           TGTGDHYSLRQICDQS+IRGGGHSCF+DSDE+R+RSKRKKFWEKAVD +ELCGP E WWG
Sbjct: 298 TGTGDHYSLRQICDQSHIRGGGHSCFKDSDEARMRSKRKKFWEKAVDTEELCGPGETWWG 357

Query: 361 VRGWMRDNFNHSNKPISYLEHFQNSRFIESILDVYWELPPVAGPSLTHQTRYDPARTTPP 420
           V+G MRD+FNH+N PISY +HFQNSR++ESILDVYWELPPVAGPSLTHQ+RYDPAR TPP
Sbjct: 358 VKGEMRDDFNHTNTPISYNQHFQNSRYVESILDVYWELPPVAGPSLTHQSRYDPARATPP 417

Query: 421 IVEDGRYGLFQRIGLGRLENSVFNGYTQMVYLQISEQES 459
           IV DG++ LFQRIGLGRL+ SVFNGYTQMVYL+IS+  S
Sbjct: 418 IVADGKHRLFQRIGLGRLDKSVFNGYTQMVYLEISKPGS 456