Jatropha Genome Database

JcCA0317081.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317081.30 - phase: 0 
         (335 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE...   534   e-152
AT3G22740.1 | Symbols: HMT3 | HMT3; homocysteine S-methyltransfe...   477   e-135
AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE...   449   e-126
AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine S-me...   374   e-104
AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine S-me...   300   8e-82

>AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE
           METHYLTRANSFERASE 2); homocysteine S-methyltransferase |
           chr3:23370575-23372587 REVERSE
          Length = 333

 Score =  534 bits (1375), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 252/322 (78%), Positives = 288/322 (89%), Gaps = 3/322 (0%)

Query: 12  ISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTVHLDYLEAGADV 71
           + DFL+Q+GG AVIDGGLATE E+HGADLNDPLWSAKCL+TSPHLI TVHLDYLEAGAD+
Sbjct: 9   MKDFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADI 68

Query: 72  IITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGACDGNNDNRVLK 131
           I +ASYQATIQGFEAKGFS +E E+LLKKSVEIA EAR+ YY++C T +   + D+++LK
Sbjct: 69  ISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSS---SMDDKILK 125

Query: 132 QRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLADSGADLIAFETV 191
           +RPILVAASVGSYGAYLADGSEYSGIYGD ITLE LKDFHRRR+QVLA+SGADLIAFET+
Sbjct: 126 KRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETI 185

Query: 192 PNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAESCSKVAAVGINC 251
           PNK+EAQA+ADLLEE ++KIP WFSFNSKDG+NVVSGDS+ EC SIAE+C KV AVGINC
Sbjct: 186 PNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINC 245

Query: 252 TPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGISDEDFVSYVNKWCEIG 311
           TPPRFI GL+L I+KVTSKPIL+YPNSGESYDAD KEWV+NTG+ DEDFVSYV KW + G
Sbjct: 246 TPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGVGDEDFVSYVEKWMDAG 305

Query: 312 ASLIGGCCRTTPKTIRAIYWTL 333
            SL+GGCCRTTP TIRAI+  L
Sbjct: 306 VSLLGGCCRTTPTTIRAIHKRL 327


>AT3G22740.1 | Symbols: HMT3 | HMT3; homocysteine
           S-methyltransferase | chr3:8033200-8035710 REVERSE
          Length = 347

 Score =  477 bits (1227), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 271/323 (83%), Gaps = 1/323 (0%)

Query: 7   EQSSLISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTVHLDYLE 66
           E SSL++DFL + GG AV+DGG ATEL++HGAD+NDPLWSAKCL+TSPHL+  VHLDYLE
Sbjct: 8   ETSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLE 67

Query: 67  AGADVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGACDGNND 126
           +GA++IITASYQATIQGF AKG S  E E LL++SVEI  EAR+I+Y RC  G+ D    
Sbjct: 68  SGANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYA 127

Query: 127 NRVLKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLADSGADLI 186
            +   +RPILVAASVGSYGAYLADGSEYSGIYGD ++ ETLKDFHRRRVQ+LA SGADLI
Sbjct: 128 GKA-SRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLI 186

Query: 187 AFETVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAESCSKVAA 246
           AFET+PNK+EA+AYADLLEEE+I IPAWFSF SKDG++V  GDS++ECA +A+SC  V A
Sbjct: 187 AFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVA 246

Query: 247 VGINCTPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGISDEDFVSYVNK 306
           +GINCT PR+IH LI+ ++++T KPI++YPNSGE YD   K+W+++ G S+EDFVSYV+K
Sbjct: 247 IGINCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEEDFVSYVSK 306

Query: 307 WCEIGASLIGGCCRTTPKTIRAI 329
           W + GASL GGCCRTTP TIRAI
Sbjct: 307 WRDAGASLFGGCCRTTPNTIRAI 329


>AT3G63250.2 | Symbols: HMT-2, ATHMT-2, HMT2 | HMT2 (HOMOCYSTEINE
           METHYLTRANSFERASE 2); homocysteine S-methyltransferase |
           chr3:23370575-23371974 REVERSE
          Length = 293

 Score =  449 bits (1156), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/278 (76%), Positives = 246/278 (88%), Gaps = 3/278 (1%)

Query: 56  LIRTVHLDYLEAGADVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYER 115
           L+  VHLDYLEAGAD+I +ASYQATIQGFEAKGFS +E E+LLKKSVEIA EAR+ YY++
Sbjct: 13  LMEQVHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDK 72

Query: 116 CQTGACDGNNDNRVLKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRV 175
           C T +   + D+++LK+RPILVAASVGSYGAYLADGSEYSGIYGD ITLE LKDFHRRR+
Sbjct: 73  CGTSS---SMDDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRL 129

Query: 176 QVLADSGADLIAFETVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECA 235
           QVLA+SGADLIAFET+PNK+EAQA+ADLLEE ++KIP WFSFNSKDG+NVVSGDS+ EC 
Sbjct: 130 QVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECI 189

Query: 236 SIAESCSKVAAVGINCTPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGI 295
           SIAE+C KV AVGINCTPPRFI GL+L I+KVTSKPIL+YPNSGESYDAD KEWV+NTG+
Sbjct: 190 SIAENCEKVVAVGINCTPPRFIEGLVLEIEKVTSKPILVYPNSGESYDADRKEWVENTGV 249

Query: 296 SDEDFVSYVNKWCEIGASLIGGCCRTTPKTIRAIYWTL 333
            DEDFVSYV KW + G SL+GGCCRTTP TIRAI+  L
Sbjct: 250 GDEDFVSYVEKWMDAGVSLLGGCCRTTPTTIRAIHKRL 287


>AT3G25900.1 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine
           S-methyltransferase | chr3:9480964-9482684 FORWARD
          Length = 326

 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/329 (54%), Positives = 240/329 (72%), Gaps = 8/329 (2%)

Query: 7   EQSSLISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTVHLDYLE 66
           ++S+L+ D +++ GG AV+DGG AT+LE HGA +NDPLWSA  L+ +P LI+ VH++YLE
Sbjct: 5   KKSALLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLE 64

Query: 67  AGADVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGACDGNND 126
           AGAD+++T+SYQATI GF ++G S +E E+LL+KSVE+A EARD ++E+       G++ 
Sbjct: 65  AGADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEK--VSKVSGHSY 122

Query: 127 NRVLKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLADSGADLI 186
           NR L      VAAS+GSYGAYLADGSEYSG YG++++L+ LKDFHRRR+QVL ++G DL+
Sbjct: 123 NRAL------VAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLL 176

Query: 187 AFETVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAESCSKVAA 246
           AFET+PNK+EAQA  +LLEEE ++IPAW  F S DG    SG+S  EC       + + A
Sbjct: 177 AFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYA 236

Query: 247 VGINCTPPRFIHGLILCIKKVTSKPILIYPNSGESYDADLKEWVQNTGISDEDFVSYVNK 306
           VGINC PP+FI  LI    K+T K I++YPNSGE +D   K+W+ +    D++F  +  K
Sbjct: 237 VGINCAPPQFIENLIRKFAKLTKKAIVVYPNSGEVWDGKAKQWLPSQCFGDDEFEMFATK 296

Query: 307 WCEIGASLIGGCCRTTPKTIRAIYWTLRR 335
           W ++GA LIGGCCRTTP TI AI   L+R
Sbjct: 297 WRDLGAKLIGGCCRTTPSTINAISRDLKR 325


>AT3G25900.2 | Symbols: HMT-1, ATHMT-1 | HMT-1; homocysteine
           S-methyltransferase | chr3:9480964-9482416 FORWARD
          Length = 268

 Score =  300 bits (769), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 145/262 (55%), Positives = 194/262 (74%), Gaps = 8/262 (3%)

Query: 7   EQSSLISDFLRQSGGVAVIDGGLATELEQHGADLNDPLWSAKCLLTSPHLIRTVHLDYLE 66
           ++S+L+ D +++ GG AV+DGG AT+LE HGA +NDPLWSA  L+ +P LI+ VH++YLE
Sbjct: 5   KKSALLEDLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLE 64

Query: 67  AGADVIITASYQATIQGFEAKGFSSQEGEALLKKSVEIACEARDIYYERCQTGACDGNND 126
           AGAD+++T+SYQATI GF ++G S +E E+LL+KSVE+A EARD ++E+       G++ 
Sbjct: 65  AGADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEK--VSKVSGHSY 122

Query: 127 NRVLKQRPILVAASVGSYGAYLADGSEYSGIYGDDITLETLKDFHRRRVQVLADSGADLI 186
           NR L      VAAS+GSYGAYLADGSEYSG YG++++L+ LKDFHRRR+QVL ++G DL+
Sbjct: 123 NRAL------VAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLL 176

Query: 187 AFETVPNKVEAQAYADLLEEENIKIPAWFSFNSKDGINVVSGDSLLECASIAESCSKVAA 246
           AFET+PNK+EAQA  +LLEEE ++IPAW  F S DG    SG+S  EC       + + A
Sbjct: 177 AFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYA 236

Query: 247 VGINCTPPRFIHGLILCIKKVT 268
           VGINC PP+FI  LI    K T
Sbjct: 237 VGINCAPPQFIENLIRKFAKAT 258