Jatropha Genome Database

JcCA0317081.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317081.20 + phase: 0 
         (179 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G04614.1 | Symbols:  | unknown protein | chr4:2327308-2327914...   138   2e-33

>AT4G04614.1 | Symbols:  | unknown protein | chr4:2327308-2327914
           REVERSE
          Length = 176

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 96/128 (75%), Gaps = 4/128 (3%)

Query: 53  GKYGRRKSGAVDFDVLKQHGYKGGMSVLSVPLPKEDTKPDWAWSTGKERREIEAVEESYE 112
            ++ ++   A D++ L+QHGYK  + +  +P P E  K DW+W+TGK+++ +E V+ESY+
Sbjct: 52  ARFAKKDKKAFDYESLQQHGYKA-VGLSDIPAPME--KQDWSWTTGKDKQRVEEVKESYQ 108

Query: 113 QRQKTRAALLDA-ERLTNVQTSKEKKNLSFSQKEKRKRDLGQASRGKNFVEEEKRLSRES 171
           +R+ TRAA +   E + N Q   ++KNLSFSQKEK+KRDLGQASRGKN+VEEEKR  RES
Sbjct: 109 EREATRAAAVTGGETIANAQLRNDRKNLSFSQKEKKKRDLGQASRGKNYVEEEKRQLRES 168

Query: 172 GIYSGFDT 179
           G+YSGFD+
Sbjct: 169 GVYSGFDS 176