Jatropha Genome Database

JcCA0317001.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.30 + phase: 0 
         (236 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63855.3 | Symbols:  | unknown protein | chr1:23699557-237009...   266   6e-72
AT1G63855.1 | Symbols:  | unknown protein | chr1:23699956-237009...   194   6e-50
AT1G63855.2 | Symbols:  | unknown protein | chr1:23700272-237009...   149   1e-36
AT1G08125.1 | Symbols:  | Expressed protein | chr1:2539748-25422...    51   5e-07
AT1G73320.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    49   3e-06
AT2G26810.2 | Symbols:  | unknown protein | chr2:11433900-114360...    47   8e-06
AT2G26810.1 | Symbols:  | unknown protein | chr2:11433900-114360...    47   8e-06

>AT1G63855.3 | Symbols:  | unknown protein | chr1:23699557-23700954
           REVERSE
          Length = 196

 Score =  266 bits (681), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 137/217 (63%), Positives = 158/217 (72%), Gaps = 34/217 (15%)

Query: 18  ISRHAF---GDDEEQPAFSISIIENMKEEYGLFVWPCSVILAEYVWQQRDRFSGARVVEL 74
           IS+H F   GD E      ISIIEN+KEEYGLFVWPCSVILAEYVWQ R RF  + ++EL
Sbjct: 9   ISQHNFYGAGDSET----CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILEL 64

Query: 75  GAGTSLPGLTAAKLGSDVTLTDDSNRLEVLDNIRKVCNLNKLKCNVLGLTWGIWDEAIFS 134
           GAGTSLPGL AAK+G++VTLTDD+ + EVLDN+R+VC LNKL CNVLGLTWG+WD  I  
Sbjct: 65  GAGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVLGLTWGVWDAPILD 124

Query: 135 LKPTIILGADVLYEASXXXXXXXXXXXXXQNSPGSVLITTYHNRSGHHLIEFLMVKWGLK 194
           L+P IILGADVLY++S                            SGHHLIEFLMVKWGLK
Sbjct: 125 LRPNIILGADVLYDSSG---------------------------SGHHLIEFLMVKWGLK 157

Query: 195 CVKLLDGFSFMPSYKASGLNGNIQLAEIVLNSKNTEE 231
           CVKLLDGFSF+PS KAS L+GNIQL EIVL+S+N  +
Sbjct: 158 CVKLLDGFSFLPSQKASVLSGNIQLVEIVLSSQNENQ 194


>AT1G63855.1 | Symbols:  | unknown protein | chr1:23699956-23700954
           REVERSE
          Length = 159

 Score =  194 bits (492), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 110/136 (80%), Gaps = 7/136 (5%)

Query: 18  ISRHAF---GDDEEQPAFSISIIENMKEEYGLFVWPCSVILAEYVWQQRDRFSGARVVEL 74
           IS+H F   GD E      ISIIEN+KEEYGLFVWPCSVILAEYVWQ R RF  + ++EL
Sbjct: 9   ISQHNFYGAGDSET----CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILEL 64

Query: 75  GAGTSLPGLTAAKLGSDVTLTDDSNRLEVLDNIRKVCNLNKLKCNVLGLTWGIWDEAIFS 134
           GAGTSLPGL AAK+G++VTLTDD+ + EVLDN+R+VC LNKL CNVLGLTWG+WD  I  
Sbjct: 65  GAGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVLGLTWGVWDAPILD 124

Query: 135 LKPTIILGADVLYEAS 150
           L+P IILGADVLY++S
Sbjct: 125 LRPNIILGADVLYDSS 140


>AT1G63855.2 | Symbols:  | unknown protein | chr1:23700272-23700954
           REVERSE
          Length = 111

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 86/107 (80%), Gaps = 7/107 (6%)

Query: 18  ISRHAF---GDDEEQPAFSISIIENMKEEYGLFVWPCSVILAEYVWQQRDRFSGARVVEL 74
           IS+H F   GD E      ISIIEN+KEEYGLFVWPCSVILAEYVWQ R RF  + ++EL
Sbjct: 9   ISQHNFYGAGDSET----CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILEL 64

Query: 75  GAGTSLPGLTAAKLGSDVTLTDDSNRLEVLDNIRKVCNLNKLKCNVL 121
           GAGTSLPGL AAK+G++VTLTDD+ + EVLDN+R+VC LNKL CNV+
Sbjct: 65  GAGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVI 111


>AT1G08125.1 | Symbols:  | Expressed protein | chr1:2539748-2542230
           REVERSE
          Length = 315

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 34/217 (15%)

Query: 45  GLFVWPCSVILAEYVWQ--QRDRFS-----GARVVELGAGTSLPGLTAAKLGSDVTLTDD 97
           G  VW  S++ A+Y+ +  ++ RFS     G R +ELGAG  + G   A LG DV  TD 
Sbjct: 35  GTTVWDASMVFAKYLGKNSRKGRFSSSKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQ 94

Query: 98  SNRLEVLD-----NIRKVCNLNKLKC----NVLGLTWGIWDEAIFSLKPTI--ILGADVL 146
              L +L      N  ++  +N         V  L WG  D  I +++P    ++G DV+
Sbjct: 95  KEVLPLLKRNVEWNTSRIVQMNPGSAFGSLRVAELDWGNEDH-ITAVEPPFDYVIGTDVV 153

Query: 147 YEASXXXXXXXXXXXXXQNSPGSVLITTYHNRSG---HHLIEFLMVKWGLKCVKL--LDG 201
           Y  S              + P + ++  Y  RS      +++     + +K +    +DG
Sbjct: 154 Y--SEQLLEPLLRTILALSGPKTTVMLGYEIRSTVVHEKMLQMWKDNFEVKTIPRSKMDG 211

Query: 202 --------FSFMPSYKASGLNGNIQLAEIVLNSKNTE 230
                      M    A+  +GN+   E+V+++  T+
Sbjct: 212 EYQDPSIHLYIMAQKSAAESSGNVSRDEVVIDTDETK 248


>AT1G73320.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 12 growth stages; BEST
           Arabidopsis thaliana protein match is: Expressed protein
           (TAIR:AT1G08125.1); Has 1043 Blast hits to 1041 proteins
           in 162 species: Archae - 0; Bacteria - 35; Metazoa -
           424; Fungi - 344; Plants - 150; Viruses - 0; Other
           Eukaryotes - 90 (source: NCBI BLink). |
           chr1:27565728-27567206 REVERSE
          Length = 316

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 14/114 (12%)

Query: 45  GLFVWPCSVILAEYVWQQRDR----FSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNR 100
           G  +W   V+L +++    D       G ++VELG+G  L G  AA LG +  LTD  +R
Sbjct: 119 GSVMWDSGVVLGKFLEHSVDSKVLSLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDR 178

Query: 101 LEVLDNIRKVCNLNKLKCNVLG------LTWG-IWDEAIFSLKPTIILGADVLY 147
           L +L   +K    N  + N  G      L WG   D  +    P  +LG+DV+Y
Sbjct: 179 LRLL---KKNIQTNLHRGNTRGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIY 229


>AT2G26810.2 | Symbols:  | unknown protein | chr2:11433900-11436078
           REVERSE
          Length = 256

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 45  GLFVWPCSVILAEYVWQQRDRFSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNRLEVL 104
           G  VWP ++++  Y+ +  D   G  V+ELG+G  + G+  +K    V  TD ++  EVL
Sbjct: 60  GQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHND--EVL 117

Query: 105 DNIRKVCNLN--------KLKCNVLGLTWGIWDEAIFSLKP-----TIILGADVLYEAS 150
             ++K  +L+          +     L WG  D+    LK       +ILGAD+ ++ S
Sbjct: 118 KILKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADICFQQS 176


>AT2G26810.1 | Symbols:  | unknown protein | chr2:11433900-11436078
           REVERSE
          Length = 256

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 15/119 (12%)

Query: 45  GLFVWPCSVILAEYVWQQRDRFSGARVVELGAGTSLPGLTAAKLGSDVTLTDDSNRLEVL 104
           G  VWP ++++  Y+ +  D   G  V+ELG+G  + G+  +K    V  TD ++  EVL
Sbjct: 60  GQLVWPGAMLMNGYLSENADILQGCSVLELGSGVGITGVLCSKFCRKVIFTDHND--EVL 117

Query: 105 DNIRKVCNLN--------KLKCNVLGLTWGIWDEAIFSLKP-----TIILGADVLYEAS 150
             ++K  +L+          +     L WG  D+    LK       +ILGAD+ ++ S
Sbjct: 118 KILKKNIDLHGHSSGPKPSAELEAAKLEWGNSDQLGQILKKHNDGFDLILGADICFQQS 176