Jatropha Genome Database

JcCA0317001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317001.20 - phase: 0 
         (215 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66090.1 | Symbols:  | unknown protein | chr5:26425831-264269...   230   5e-61

>AT5G66090.1 | Symbols:  | unknown protein | chr5:26425831-26426955
           FORWARD
          Length = 210

 Score =  230 bits (587), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 110/154 (71%), Positives = 128/154 (83%), Gaps = 4/154 (2%)

Query: 66  KAKAMPQESEVSLA----ADAFTHFKHLLLPITDRNPYLSEGTRQXXXXXXXXXKKYGAD 121
           + KA  +E+E S +     DAF++ KHLLLP+ DRNPYLSEGTRQ         KKYGAD
Sbjct: 57  RVKAQAKEAEASPSPVGVGDAFSNVKHLLLPVIDRNPYLSEGTRQAAATTTSLAKKYGAD 116

Query: 122 ITVVVIDEKERESLPEHETQMSSIRWHLSEGGFQEFKLLERLGEGNKPTAIIGDVADELN 181
           ITVVVIDE++RES  EHETQ+S+IRWHLSEGGF+EFKLLERLGEG K TAIIG+VADEL 
Sbjct: 117 ITVVVIDEEKRESSSEHETQVSNIRWHLSEGGFEEFKLLERLGEGKKATAIIGEVADELK 176

Query: 182 LDLVVISMEAIHSKHVDANLLAEFIPCPVLLLPL 215
           ++LVV+SMEAIHSK++DANLLAEFIPCPVLLLPL
Sbjct: 177 MELVVMSMEAIHSKYIDANLLAEFIPCPVLLLPL 210