Jatropha Genome Database

JcCA0316711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316711.10 + phase: 0 /partial
         (550 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G48160.1 | Symbols:  | EXPRESSED IN: 23 plant structures; EXP...   302   4e-82
AT3G63070.1 | Symbols:  | PWWP domain-containing protein | chr3:...   268   8e-72
AT5G23150.1 | Symbols: HUA2 | HUA2 (ENHANCER OF AG-4 2); transcr...   108   1e-23
AT5G08230.1 | Symbols:  | PWWP domain-containing protein | chr5:...   104   1e-22

>AT2G48160.1 | Symbols:  | EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Regulation of nuclear pre-mRNA protein
           (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST
           Arabidopsis thaliana protein match is: PWWP
           domain-containing protein (TAIR:AT3G63070.1); Has 1292
           Blast hits to 1135 proteins in 175 species: Archae - 2;
           Bacteria - 174; Metazoa - 679; Fungi - 194; Plants -
           113; Viruses - 2; Other Eukaryotes - 128 (source: NCBI
           BLink). | chr2:19689784-19696584 REVERSE
          Length = 1366

 Score =  302 bits (773), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 195/427 (45%), Positives = 261/427 (61%), Gaps = 11/427 (2%)

Query: 1   MAPSXXXXXXXXXXXXXXXXQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVY 60
           MAPS                + KVGDLVLAKVKGFPAWPA VSEPEKW  S D KKV V+
Sbjct: 1   MAPSRRKGGGRAAAVAAACRKRKVGDLVLAKVKGFPAWPAVVSEPEKWDASPDSKKVFVH 60

Query: 61  FFGTQQIAFCNPADVEAFTEEKKQSLLVKRQGKGADFVRAVQEIIDSYEKSKKTNQADDL 120
           FFGTQQIAFCNP DVEAFTEE+KQSLL +R  KG+DFVRAV+EII+SYEK K+  +A D 
Sbjct: 61  FFGTQQIAFCNPGDVEAFTEERKQSLLTRRHAKGSDFVRAVKEIIESYEKLKQQERASDP 120

Query: 121 NSGEEVTLANGGNSMESSADFE---SKGRTETSEATVTGRNDPSLGSSVAPDVSKIGSLL 177
            S EE TL +  N+       E   +   T+ +     GR++ +L +  A    ++ +L 
Sbjct: 121 KSAEEGTLGSAENTTLMPQVIEIPTATSLTQMNSDPSHGRDESTLLNEDASAAEQMLALR 180

Query: 178 DKEALLEQPTDNVVVTAKPVITTYTSRKRSGGLRTRKRATEKQDXXXXXXXXXXXXXXXX 237
           D      +  D+ VV     I TY+SRKR+GG+R++  A + +                 
Sbjct: 181 DNSGPRNKACDSAVVKEPRKIATYSSRKRNGGVRSQNCAPQNETCPVQRSKSPSRLQTEK 240

Query: 238 XQNLMIPSKLDGDMNVGDASTEVILDRSLRRNKRVRKSPDASEWDDVDSSAHVSNGSIED 297
            Q+ M+ +  DG   + D     + D +LRR KR+R+S   SE DDV +S+  S+GS E+
Sbjct: 241 LQSSMLQNS-DGGQTIDD-----VEDGALRREKRIRRSSGHSESDDVATSSLNSHGSDEE 294

Query: 298 NSSEIVTVDSDSLSLNEGSTIDSESKPEHSETVVECLEGDVELSKGLDFQIKAVVIKKKR 357
           N+SEI TV+SD+ + NEG+ +DS SK E  +   + LEGD +L+KGL+FQI  +V +KKR
Sbjct: 295 NASEIATVESDN-NRNEGNGVDSGSKVEQIDIGGKFLEGDYDLNKGLNFQINIMVKRKKR 353

Query: 358 KPNRKRVTNEAAEQHVRLETEADLDAGVHSSSQNSQ-SCENLNERHNKEDGDEHLPLVKR 416
           KP RKR T++  +   ++E EA  +AG  ++ Q SQ S E   ER  +E+GDEHLPLVKR
Sbjct: 354 KPTRKRGTSDVVDPQAKVEGEAVPEAGARNNVQTSQNSHEKFTERPCEENGDEHLPLVKR 413

Query: 417 ARVRMGK 423
           ARVRM +
Sbjct: 414 ARVRMSR 420


>AT3G63070.1 | Symbols:  | PWWP domain-containing protein |
           chr3:23302667-23309575 FORWARD
          Length = 1347

 Score =  268 bits (684), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 187/428 (43%), Positives = 245/428 (57%), Gaps = 13/428 (3%)

Query: 1   MAPSXXXXXXXXXXXXXXXXQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVY 60
           MAPS                +WKVGDLVLAKVKGFPAWPA V EPEKWG+SAD KKV V+
Sbjct: 1   MAPSRKRGGGRAAAASSARREWKVGDLVLAKVKGFPAWPAVVDEPEKWGHSADSKKVTVH 60

Query: 61  FFGTQQIAFCNPADVEAFTEEKKQSLLVKRQGKGADFVRAVQEIIDSYEKSKKTNQADDL 120
           FFGTQQIAFCN  DVE+FTEEKKQSLL +R  KG+DFVRAV+EI +SYEK K+ +QA   
Sbjct: 61  FFGTQQIAFCNHGDVESFTEEKKQSLLTRRHAKGSDFVRAVKEITESYEKLKQQDQASGP 120

Query: 121 NSGEEVTLANGGNSMESSADFE----SKGRTETSEATVTGRNDPSLGSSVAPDVSKIGSL 176
              EE T  + GN+ +     E    S+  T+   ++  GR++ +L S  A    ++ +L
Sbjct: 121 KYAEETTAGSSGNTSQLPQACENLIGSRLDTQIESSSSHGRDELTLLSEDASAAEQMLAL 180

Query: 177 LDKEALLEQPTDNVVVTAKPVITTYTSRKRSGGLRTRKRATEKQDXXXXXXXXXXXXXXX 236
                      D+        I TY+SR+R+  +R  K A +                  
Sbjct: 181 RHNTLAHNGACDSAAAKDLCEIATYSSRRRNERVRALKYAPQSIILPVEHSKISSRLELD 240

Query: 237 XXQNLMIPSKLDGDMNVGDASTEVILDRSLRRNKRVRKSPDASEWDDVDSSAHVSNGSIE 296
             Q  M+    DG  +V        ++    R ++  ++   SE DDV SS    +GS E
Sbjct: 241 RVQRSMLQCS-DGGPSVNS------INGKAIRRRKRIRTSGQSESDDVVSSDLNLHGSDE 293

Query: 297 DNSSEIVTVDSDSLSLNEGSTIDSESKPEHSETVVECLEGDVELSKGLDFQIKAVVIKKK 356
           DN+SEI TV+S++ S NEG+ +DS SK E+S+ V E  +G  EL+KGLDF I  +V +KK
Sbjct: 294 DNASEIATVESNNNSRNEGNGVDSGSKVEYSDAVGEGCDGGHELNKGLDFHISTMVKRKK 353

Query: 357 RKPNRKRVTNEAAEQHVRLETEADLDAGVHSSSQNSQ-SCENLNERHNKEDGDEHLPLVK 415
           RKP RKR T++  +   ++E E  L      S Q SQ S E LNER  +E+GDEHLPLVK
Sbjct: 354 RKPTRKRETSDIIDPPAKVEAEG-LGPNACDSCQRSQNSHERLNERPCEENGDEHLPLVK 412

Query: 416 RARVRMGK 423
           RARVRM +
Sbjct: 413 RARVRMSR 420


>AT5G23150.1 | Symbols: HUA2 | HUA2 (ENHANCER OF AG-4 2);
           transcription factor | chr5:7786173-7792080 FORWARD
          Length = 1392

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 70/105 (66%), Gaps = 3/105 (2%)

Query: 21  QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVYFFGTQQIAFCNPADVEAFTE 80
           Q  +GDLVLAKVKGFPAWPA +S PE W  + D KK  V FFGT++IAF  P D++AFT 
Sbjct: 17  QLVLGDLVLAKVKGFPAWPAKISRPEDWDRAPDPKKYFVQFFGTEEIAFVAPPDIQAFTS 76

Query: 81  EKKQSLLVKRQGKGAD-FVRAVQEIIDSYE--KSKKTNQADDLNS 122
           E K  LL + QGK    F +AV++I  ++E  ++ K+N   D +S
Sbjct: 77  EAKSKLLARCQGKTVKYFAQAVEQICTAFEGLQNHKSNALGDEDS 121


>AT5G08230.1 | Symbols:  | PWWP domain-containing protein |
           chr5:2643846-2649788 REVERSE
          Length = 1445

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 87/150 (58%), Gaps = 11/150 (7%)

Query: 21  QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVYFFGTQQIAFCNPADVEAFTE 80
           + ++GDLVLAKVKGFPAWPA + +PE W  + D KK  V F+GT +I F  P D++ FT 
Sbjct: 17  EMRLGDLVLAKVKGFPAWPAKIGQPEDWNQAPDPKKHFVQFYGTGEIGFVTPPDIQPFTS 76

Query: 81  EKKQSLLVKRQGKGAD-FVRAVQEIIDSYEKSKKTNQADDLNSGEEVTLANGGNSMESSA 139
           E K+ L  + QGK    F +AV+EI  ++E+S+K  Q  D+  G E  L    N++E S 
Sbjct: 77  ETKKKLSARCQGKTVKYFSQAVEEISAAFEESQK--QKSDI-VGNEALL----NAVEPSV 129

Query: 140 ---DFESKGRTETSEATVTGRNDPSLGSSV 166
               + ++  ++      + R DP LG  V
Sbjct: 130 TKPKYLNQASSDGKSDKFSSRADPCLGKLV 159