Jatropha Genome Database

JcCA0316521.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316521.20 + phase: 0 
         (465 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19860.1 | Symbols:  | zinc finger (CCCH-type) family protein...   194   9e-50
AT3G51180.1 | Symbols:  | zinc finger (CCCH-type) family protein...   109   4e-24
AT5G66270.1 | Symbols:  | zinc finger (CCCH-type) family protein...   102   4e-22

>AT1G19860.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr1:6891654-6894400 REVERSE
          Length = 413

 Score =  194 bits (494), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 215/451 (47%), Gaps = 93/451 (20%)

Query: 9   RVTWAAGVNLCQVKLFLTEDSPSKVGTQAQDNLQKKPSWVLHHSNADEFNDLPPGFEGCH 68
           RV+W     LCQV+LF++EDSPS+VG+++QD+LQ K     H S+    ++LPPGF G  
Sbjct: 7   RVSWPPDFKLCQVRLFISEDSPSQVGSESQDHLQAKSPLASHPSD----DNLPPGFGGPF 62

Query: 69  TLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVLEAVFPRPS 128
           +  N  +++ S IP I+WK   +++L  +W V AG+ES E +AQ  RE+RVLEA +P  S
Sbjct: 63  S-ANESQIKLSDIPLIKWKCSVQILLDREWKVVAGDESKEVEAQNERELRVLEAFYPGAS 121

Query: 129 AIPPGPSISLDIEEEYYDDRLTXXXXXXXXXXXXXXXXSDSSAPVN---NLSKSPAILPT 185
           +IPP PS+  D+E+ ++DD+ T                S S  P     ++   P+I   
Sbjct: 122 SIPPNPSVPADVEDSHHDDQQTIVIPILPVEDDDIAMDSASDFPTQSGVDVGTEPSI--- 178

Query: 186 RLPNSAAHNIPELEPRTSKKRTHGVSPXXXXXXXXXXXXXXXXXXKSMEDGSQIDTDLLI 245
                        +  TS   T    P                   S E GS ID DLLI
Sbjct: 179 ------------TDENTSTSSTLPAGP--------DIMAALSAISNSKEQGSMIDQDLLI 218

Query: 246 KILSDPKMIEKLINNKKPPLSPASSPTDGNLHNIFAGLKPIPKPVARSTSLPTVLSSPIP 305
           KILS+PK++E L+ N+            G+  ++ +    +        +   V ++PI 
Sbjct: 219 KILSNPKLVENLVANR------------GSAGSVSSNTSSLYSSSTHEAN-GVVTTAPIS 265

Query: 306 GSLQPPSTLSEVQPTGTRMPSQPMTRPVVANLVQSKANSFLAQPVMAPKPIPNVMPPPLG 365
            + Q        QP  T +P  PM                 A    AP+  PN      G
Sbjct: 266 SNGQ-----FYAQPPITHIP--PM-----------------AYTPHAPQDQPN-----YG 296

Query: 366 VMPVKDVNYIKNLIREHGSEKKDQNYNKIQNLGFAQNL------------------KLRE 407
             P +D +Y KNLI++HG ++  Q    +Q+LG+  NL                  + R+
Sbjct: 297 APPARDASYYKNLIQQHGGDR--QETPPVQHLGYRYNLQPGGGPNPEMVNSSNNNQRPRD 354

Query: 408 EKPKFQKPCMYYNTPRGCRNGSNCLFRHDSS 438
            KPK  K CMY+N+ RGCR+G+NC+++HD++
Sbjct: 355 SKPKIMKACMYFNSARGCRHGANCMYQHDAT 385


>AT3G51180.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr3:19013720-19016042 FORWARD
          Length = 521

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 87/151 (57%), Gaps = 13/151 (8%)

Query: 1   MKRSRKSNRVTWAAGVNLCQVKLFLTEDSPSKVGTQAQDNLQKKPSWVLHHSNADEFNDL 60
           MKRS+K  RV+W  G  LCQVK+F TEDSP+ V +Q Q +         + S      DL
Sbjct: 4   MKRSKKP-RVSWPPGPKLCQVKVFRTEDSPANVASQPQRHS--------YPSRKPRGPDL 54

Query: 61  PPGFEGCHTLKNPLKVESSLIPTIQWKSPP-KLVLSYDWHVGAGEESLEAKAQKLREMRV 119
           PPGFEG H     +K   S IP I+WK PP K  ++  W VG G  S E + + LR  +V
Sbjct: 55  PPGFEGNHYA---VKPNVSNIPRIKWKRPPPKFSVNDTWLVGCGGGSSEWQNENLRISKV 111

Query: 120 LEAVFPRPSAIPPGPSISLDIEEEYYDDRLT 150
           LEA++P  SAIP  PS+S  +E E +DD  T
Sbjct: 112 LEAIYPHRSAIPSRPSVSPAVEAECFDDSKT 142



 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 126/320 (39%), Gaps = 112/320 (35%)

Query: 231 KSMEDGSQIDTDLLIKILSDPKMIEKLINNKKPPLSPASSPTDGN--LHNIFAGLKPIPK 288
           K+ E GS +DT+LLIK LSDPK+I+ LI +     S  SS T     + NI +  +P+P+
Sbjct: 213 KTKEQGSLVDTELLIKFLSDPKLIKNLITD----TSGKSSETKNQPIVTNINSATRPVPQ 268

Query: 289 P-------------------------VARSTSLPTVLSSP---IPGSLQPPS-------- 312
           P                         V+RS + P    SP   + GS+ PP         
Sbjct: 269 PVSAVTASPMARKPQPVIIPQEHSVAVSRSFTNPERRVSPPKPVNGSISPPKPITGKPSS 328

Query: 313 ---------TLSEVQPTGTRMPS-------------------------QPMTRPVVA--- 335
                     +++ QP   R PS                         QP  +P  A   
Sbjct: 329 IPMPVHFHVGIAKEQPQPARFPSSSLPMNLNFHRPPNVFSEPKVIVNPQPQHQPYSAFRT 388

Query: 336 ---NLVQSKA----------NSF-----LAQPVMAPKPIPNVMPPPLGVMPVKDVNYIKN 377
              N VQS            NS+      A  + + KP+         V P+K ++Y KN
Sbjct: 389 SEMNYVQSSIGLGRGPQTGFNSYPMNFSRADAIGSAKPV---------VQPMKGLDYFKN 439

Query: 378 LIREHGSEKKDQNYNKIQNLGFAQNLKLREEKPKFQKPCMYYNTPRGCRNGSNCLFRHDS 437
           LIREHG++  + N    Q   F   +   +   K  + C+Y+ T  GC  G +C + HD 
Sbjct: 440 LIREHGTDNHETNQYHSQTGIFNGRI---DNNNKIHQQCIYFGTANGCNMGDSCTYVHD- 495

Query: 438 SFQFQTGGSIEAPGAKRIKL 457
             +++      AP AKR+K 
Sbjct: 496 --RYRPNFEAAAPRAKRMKF 513


>AT5G66270.1 | Symbols:  | zinc finger (CCCH-type) family protein |
           chr5:26473507-26475566 REVERSE
          Length = 449

 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 26/147 (17%)

Query: 1   MKRSRKSNRVTWAAGVNLCQVKLFLTEDSPSKVGTQAQDNLQKKPSWVLHHSNADEFNDL 60
           M +  K  RV+WA+   LCQVKLFL++D P KV +                       +L
Sbjct: 1   MMKKTKKGRVSWASDSMLCQVKLFLSDDCPVKVAS-----------------------NL 37

Query: 61  PPGFEGCHTLKNPLKVESSLIPTIQWKSPPKLVLSYDWHVGAGEESLEAKAQKLREMRVL 120
           PPGFE         K   S IP I+WK PP  VL     VG+G +S+E +++ LR  +VL
Sbjct: 38  PPGFEATDYAT---KRIISHIPRIKWKRPPLFVLDDALLVGSGGKSIETRSENLRISKVL 94

Query: 121 EAVFPRPSAIPPGPSISLDIEEEYYDD 147
           EA +P  S IP  PS++L +EEE+YDD
Sbjct: 95  EAFYPHRSVIPSRPSLTLAVEEEHYDD 121



 Score = 95.5 bits (236), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 133/285 (46%), Gaps = 71/285 (24%)

Query: 234 EDGSQIDTDLLIKILSDPKMIEKLINNKK-PPLSPASS---------------------- 270
           E GSQ+D DLL+K+LSDPK++E LIN  K  PL  A++                      
Sbjct: 173 EQGSQVDPDLLVKLLSDPKIVENLINGMKGKPLETANNSLNTDITEPRLAPQHVTSTTMD 232

Query: 271 ----PTDGNL--HNIFAGLK------PIPKP---VARSTSLPTVLSSPIPGSLQPP-STL 314
               P  GN+  HN+   ++      P+PKP   ++ + S+   L  P P     P S+ 
Sbjct: 233 RNPPPMPGNVAPHNVPVSVQSSATDPPLPKPNQPMSSALSMNLTLQKPTPVVHNYPLSSG 292

Query: 315 SEVQPTGTRMPSQPMTRPVVANLVQSKANSFLAQPVMA------PKPIPNVMPPPL---- 364
            +V+ + T  P +P T     ++V S+  + L  P  +      P+       P +    
Sbjct: 293 IKVEDSYTAAPLKPSTG---DDVVVSEQKTQLLFPCSSWNMNKVPESARTETDPQIRNGN 349

Query: 365 -------GVMPVKDVNYIKNLIREHGSEK----KDQNYNKIQNLGFAQNLKLREEKPKFQ 413
                     PVKD++Y KNLIREHG+ K    +  NY      G   + K+   K + Q
Sbjct: 350 TNRDDQVSAKPVKDLDYFKNLIREHGAVKPATTETNNYK-----GRVDHKKI--VKVRIQ 402

Query: 414 KPCMYYNTPRGCRNGSNCLFRHDSSFQFQTGGS-IEAPGAKRIKL 457
           KPCMY+N P+GCR G +CL+ HDSS +  T  +    P AKR+K 
Sbjct: 403 KPCMYFNRPKGCRMGESCLYLHDSSKRLWTDVAPPHFPRAKRLKF 447