Jatropha Genome Database

JcCA0316511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316511.20 - phase: 2 /partial
         (66 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49710.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    56   5e-09

>AT3G49710.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr3:18437845-18440010 FORWARD
          Length = 721

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 4/43 (9%)

Query: 24  MKLFKEMREIGIEMDGFTLSGVINGVITACCNDLNLIRQFHCW 66
           M LFK MR++G E+DGFTLS    G+I ACC+ ++LI+Q HC+
Sbjct: 125 MVLFKRMRKLGFEVDGFTLS----GLIAACCDRVDLIKQLHCF 163