Jatropha Genome Database

JcCA0316451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316451.10 - phase: 0 
         (461 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34350.1 | Symbols: CLB6, ISPH, HDR | HDR (4-HYDROXY-3-METHYL...   763   0.0  

>AT4G34350.1 | Symbols: CLB6, ISPH, HDR | HDR
           (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE);
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase/
           4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
           chr4:16428681-16431038 REVERSE
          Length = 466

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/468 (77%), Positives = 420/468 (89%), Gaps = 9/468 (1%)

Query: 1   MAISLQLCRVSLRTDLLSRENLTP----LNRRKPFSVRCAAAAGDE---SSSVAMESEFD 53
           MA++LQ  R+ +R D   REN       L RRK  SVRC++  GDE   S SV M+S+FD
Sbjct: 1   MAVALQFSRLCVRPDTFVRENHLSGSGSLRRRKALSVRCSS--GDENAPSPSVVMDSDFD 58

Query: 54  TKAFRHNLTRSKNYNRRGFGYKEETLELMSQEYTSDIIKTLKENGNQYTWGNITVKLAEA 113
            K FR NLTRS NYNR+GFG+KEETL+LM++EYTSDI++TLK NG  Y+WG++TVKLA+A
Sbjct: 59  AKVFRKNLTRSDNYNRKGFGHKEETLKLMNREYTSDILETLKTNGYTYSWGDVTVKLAKA 118

Query: 114 YGFCWGVERAVQIAYEARKQFPDENIWLTNEVIHNPTVNQRLEEMNVQIIPVEEGRKQFE 173
           YGFCWGVERAVQIAYEARKQFP+E +W+TNE+IHNPTVN+RLE+M+V+IIPVE+ +KQF+
Sbjct: 119 YGFCWGVERAVQIAYEARKQFPEERLWITNEIIHNPTVNKRLEDMDVKIIPVEDSKKQFD 178

Query: 174 VVDSGDVVILPAFGAAVEEMLTLSDKKVQIVDTTCPWVSKVWNTVEKHKKGDYTSIIHGK 233
           VV+  DVVILPAFGA V+EM  L+DKKVQIVDTTCPWV+KVWNTVEKHKKG+YTS+IHGK
Sbjct: 179 VVEKDDVVILPAFGAGVDEMYVLNDKKVQIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGK 238

Query: 234 YSHEETVATASFAGKYIIVKNMKEAQYVCDYILGGQLDGSSSTREAFLEKFKNAVSEGFD 293
           Y+HEET+ATASFAGKYIIVKNMKEA YVCDYILGGQ DGSSST+E F+EKFK A+S+GFD
Sbjct: 239 YNHEETIATASFAGKYIIVKNMKEANYVCDYILGGQYDGSSSTKEEFMEKFKYAISKGFD 298

Query: 294 PDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNDHFISFNTICDATQERQD 353
           PD DLVKVGIANQTTMLKGETEEIG+L+E TMMRK+GVENV+ HFISFNTICDATQERQD
Sbjct: 299 PDNDLVKVGIANQTTMLKGETEEIGRLLETTMMRKYGVENVSGHFISFNTICDATQERQD 358

Query: 354 AMFKLVEEKLDLILVVGGWNSSNTSHLQEIAELRGIPSYWIDSEQRIGPGNRIAYKLNHG 413
           A+++LVEEK+DL+LVVGGWNSSNTSHLQEI+E RGIPSYWIDSE+RIGPGN+IAYKL++G
Sbjct: 359 AIYELVEEKIDLMLVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAYKLHYG 418

Query: 414 ELVVKENFLPEGPITIGVTSGASTPDKVVEDALVKVFNIKREESLQVA 461
           ELV KENFLP+GPITIGVTSGASTPDKVVEDALVKVF+IKREE LQ+A
Sbjct: 419 ELVEKENFLPKGPITIGVTSGASTPDKVVEDALVKVFDIKREELLQLA 466