Jatropha Genome Database
- JcCA0316351.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0316351.10 + phase: 0
(306 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor, ... 445 e-125
AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family ... 159 2e-39
AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family ... 150 1e-36
AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding ... 146 1e-35
AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor, ... 135 4e-32
AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding / ... 122 4e-28
AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding / DNA-de... 119 2e-27
AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding / ... 103 9e-23
>AT2G16440.1 | Symbols: MCM4 | DNA replication licensing factor,
putative | chr2:7126536-7130665 REVERSE
Length = 847
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/287 (77%), Positives = 246/287 (85%), Gaps = 4/287 (1%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
L +VMEQQTVSIAKAGIIASLNARTSVLACANP GSRYNPRLSVI+NIHLPPTLLSRFDL
Sbjct: 562 LHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIENIHLPPTLLSRFDL 621
Query: 83 IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
IYLILDK DEQTDR LAKHIVALHFEN E+AQ++ +DI TLTTY+SYARK IHP+LSDEA
Sbjct: 622 IYLILDKPDEQTDRRLAKHIVALHFENAESAQEEAIDITTLTTYVSYARKNIHPKLSDEA 681
Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAF 202
+EELTRGYVE+R+ G F GSSKKVITATPRQIESLIRLSEALAR+R SE VEKHDV EAF
Sbjct: 682 AEELTRGYVELRKAGKFAGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVDEAF 741
Query: 203 RLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRENLVSATRNIIMEKLQLGGPSMRX 262
RLL VAMQQSATDH+TGTIDMDLI TGVSASERMRR+ S+ R+I +EK+Q+GG SMR
Sbjct: 742 RLLRVAMQQSATDHATGTIDMDLINTGVSASERMRRDTFASSIRDIALEKMQIGGSSMRL 801
Query: 263 XXXXXXXKKQSSGN---EVHLQDLRNAVATLSSEGFVVTHGDSVKRI 306
KK GN E+HL D+R AVATL+SEGF+V GD +KR+
Sbjct: 802 SELLEELKKH-GGNINTEIHLHDVRKAVATLASEGFLVAEGDRIKRV 847
>AT5G44635.1 | Symbols: MCM6 | minichromosome maintenance family
protein / MCM family protein | chr5:18006431-18010542
REVERSE
Length = 831
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 126/201 (62%), Gaps = 7/201 (3%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
+ + MEQQT+SI KAGI A+LNARTS+LA ANP+G RY+ + N++LPP +LSRFDL
Sbjct: 472 IHEAMEQQTISITKAGIQATLNARTSILAAANPVGGRYDKSKPLKYNVNLPPAILSRFDL 531
Query: 83 IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIATLTTYISYARKRIHPRLSDEA 142
+Y+++D DE TD H+A HIV +H + E A L YI+YA K + P+LS EA
Sbjct: 532 VYVMIDDPDEVTDYHIAHHIVRVH-QKHEAALSPEFTTVQLKRYIAYA-KTLKPKLSPEA 589
Query: 143 SEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDVIEAF 202
+ L YV +RR PG ++ T RQ+E+LIRLSEA+AR L LV+ V+ A
Sbjct: 590 RKLLVESYVALRRGDTTPG-TRVAYRMTVRQLEALIRLSEAIARSHLEILVKPSHVLLAV 648
Query: 203 RLLEVAMQQSATDHSTGTIDM 223
RLL+ S +G ID+
Sbjct: 649 RLLKT----SVISVESGDIDL 665
>AT2G07690.1 | Symbols: MCM5 | minichromosome maintenance family
protein / MCM family protein | chr2:3523379-3527388
REVERSE
Length = 727
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 17/221 (7%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
+ + MEQQT+SIAKAGI LN+RTSVLA ANP RY+ + DNI L T+LSRFDL
Sbjct: 452 IHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDL 511
Query: 83 IYLILDKADEQTDRHLAKHIVALH-----FENPETAQQDVLDIATLTTYISYARKRIHPR 137
I+++ D D+ +A HI+ +H F + T D + L YI Y R R HPR
Sbjct: 512 IFIVKDIRKYSQDKEIASHIIRVHASANKFSDENT---DSKEDNWLKRYIQYCRARCHPR 568
Query: 138 LSDEASEELTRGYV----EMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELV 193
LS +A+E L R YV +M+RR + G + I T RQ+E+++RLSE+LA++RLS
Sbjct: 569 LSKDAAENLQRKYVTIRMDMKRRAHETGEAAP-IPITVRQLEAIVRLSESLAKMRLSHEA 627
Query: 194 EKHDVIEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASE 234
DV +AF+L + S D + I+ + TG A+E
Sbjct: 628 TPDDVDKAFKLFDT----STMDAARSGINQQINITGEMANE 664
>AT4G02060.1 | Symbols: PRL, MCM7 | PRL (PROLIFERA); ATP binding /
DNA binding / DNA-dependent ATPase/
nucleoside-triphosphatase/ nucleotide binding |
chr4:901484-905297 FORWARD
Length = 716
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 121/190 (63%), Gaps = 10/190 (5%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
+ +VMEQQTVSIAKAGI SLNART+VLA ANP RY+ R + +NI+LPP LLSRFDL
Sbjct: 453 IHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDL 512
Query: 83 IYLILDKADEQTDRHLAKHIVALH-FENPETAQQDVLDIATLTTYISYARKRIHPRLSDE 141
++LILD+AD +D LAKH++ +H E + L+ L YIS AR R+ P + E
Sbjct: 513 LWLILDRADMDSDLELAKHVLHVHQTEESPALGFEPLEPNILRAYISAAR-RLSPYVPAE 571
Query: 142 ASEELTRGYVEMRR---RGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKHDV 198
E + Y +R+ + N P S V R + S++R+S ALAR+R SE V + DV
Sbjct: 572 LEEYIATAYSSIRQEEAKSNTPHSYTTV-----RTLLSILRISAALARLRFSESVAQSDV 626
Query: 199 IEAFRLLEVA 208
EA RL++++
Sbjct: 627 DEALRLMQMS 636
>AT5G46280.1 | Symbols: MCM3 | DNA replication licensing factor,
putative | chr5:18769902-18773606 REVERSE
Length = 776
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 38/224 (16%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
+ +VMEQQTV+IAKAGI ASLNAR SV+A ANPI Y+ L+ NI LP +LLSRFDL
Sbjct: 412 IHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDL 471
Query: 83 IYLILDKADEQTDRHLAKHIVALH-FEN------PET----AQQD--------------- 116
++++LD+ D D +++H++ +H ++N P+ A++D
Sbjct: 472 LFIVLDQMDAGIDSMISEHVLRMHRYKNDRGEAGPDGSLPYAREDNAESEMFVKYNQTLH 531
Query: 117 -----------VLDIATLTTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKK 165
L I L YI YA+ RI P+L+DEASE + Y ++R G+ +
Sbjct: 532 GKKKRGQTHDKTLTIKFLKKYIHYAKHRITPKLTDEASERIAEAYADLRNAGS-DTKTGG 590
Query: 166 VITATPRQIESLIRLSEALARIRLSELVEKHDVIEAFRLLEVAM 209
+ T R +E++IRL+ A A+++LS V K D A +L+ A+
Sbjct: 591 TLPITARTLETIIRLATAHAKMKLSSEVTKADAEAALKLMNFAI 634
>AT3G09660.1 | Symbols: MCM8 | MCM8; ATP binding / DNA binding /
DNA-dependent ATPase/ nucleoside-triphosphatase/
nucleotide binding | chr3:2961314-2966166 REVERSE
Length = 777
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 22/232 (9%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
L + MEQQ VS+AKAG++ASL+ARTSV+A ANP+G YN +V +N+ + LLSRFDL
Sbjct: 479 LLEAMEQQCVSVAKAGLVASLSARTSVIAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 538
Query: 83 IYLILDKADEQTDRHLAKHIVALH--FENPETAQQDVL----------DIATLTTYISYA 130
++++LDK DE D+ +++HI++ H Q+ +L + T +++
Sbjct: 539 VFILLDKPDELLDKQVSEHIMSHHRMLGMQTCMQKGILYFQDCGWTLRKMTTFLRFLANC 598
Query: 131 RKRIHPR----LSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALAR 186
I P +S +A E + + Y+++R +S T RQ+ESL+RL++A AR
Sbjct: 599 LGNIFPMHGILMSKDAGEIIQKFYLKLRDH----NTSADSTPITARQLESLVRLAQARAR 654
Query: 187 IRLSELVEKHDVIEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRR 238
+ L E + D ++ +++ ++ D G +D + G+S + +R
Sbjct: 655 VDLREEITVQDAMDVVEIMKESLYDKLIDEH-GVVDFGR-SGGMSQQKEAKR 704
>AT1G44900.1 | Symbols: MCM2 | ATP binding / DNA binding /
DNA-dependent ATPase | chr1:16970291-16974457 FORWARD
Length = 936
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 113/202 (55%), Gaps = 23/202 (11%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
+ + MEQQ++SI+KAGI+ SL AR SV+A ANP+G RY+ S N+ L +LSRFD+
Sbjct: 626 IHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKSFAQNVELTDPILSRFDI 685
Query: 83 IYLILDKADEQTDRHLAKHIVALHFE-----------NPETAQQ--------DVLDIATL 123
+ ++ D D TD LA+ +V HF+ +PE Q +VL L
Sbjct: 686 LCVVKDVVDPVTDEMLAEFVVNSHFKSQPKGGKMEDSDPEDGIQGSSGSTDPEVLPQNLL 745
Query: 124 TTYISYARKRIHPRLSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEA 183
Y++Y++ + P+L + +++L Y +RR + + ++ R +ES+IR+SEA
Sbjct: 746 KKYLTYSKLYVFPKLGELDAKKLETVYANLRRE----SMNGQGVSIATRHLESMIRMSEA 801
Query: 184 LARIRLSELVEKHDVIEAFRLL 205
AR+ L + V + DV A R+L
Sbjct: 802 HARMHLRQYVTEEDVNMAIRVL 823
>AT2G14050.1 | Symbols: MCM9 | MCM9; ATP binding / DNA binding /
DNA-dependent ATPase/ nucleoside-triphosphatase/
nucleotide binding | chr2:5909240-5913817 FORWARD
Length = 646
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 15/203 (7%)
Query: 23 LFQVMEQQTVSIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPTLLSRFDL 82
+ + MEQQ++S+AKAG++ +L+ +T V NP G +Y+P S+ N L LLSRFD+
Sbjct: 433 IHEAMEQQSISVAKAGLVTTLSTKTIVFGATNPKG-QYDPDQSLSVNTALSGPLLSRFDI 491
Query: 83 IYLILDKADEQTDRHLAKHIVALHFENPETAQQDVLDIAT------LTTYISYARKRIHP 136
+ ++LD + + D ++ HI+A E ++V D+ T L YI + +K P
Sbjct: 492 VLVLLDTKNPEWDAVVSSHILA---EVQIEQDREVDDLTTIWPLPMLQRYIQFVKKNFRP 548
Query: 137 RLSDEASEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRLSELVEKH 196
LS EA EE+ Y ++RR S+ T R +ESLIRL++A AR+ V +
Sbjct: 549 VLSKEA-EEIISSYYRLQRR----SSTHNAARTTVRMLESLIRLAQAHARLMFRNEVTRL 603
Query: 197 DVIEAFRLLEVAMQQSATDHSTG 219
D I A +E +M SA S G
Sbjct: 604 DAITAILCIESSMTISAIVDSMG 626