Jatropha Genome Database
- JcCA0316341.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0316341.20 - phase: 0
(248 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G26490.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 271 2e-73
AT5G56050.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 237 6e-63
AT3G26350.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 160 7e-40
AT1G13050.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 150 6e-37
AT1G13050.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 144 4e-35
AT5G56070.1 | Symbols: | unknown protein | chr5:22708679-227092... 57 1e-08
AT3G11650.1 | Symbols: NHL2 | NHL2 | chr3:3676264-3676986 REVERSE 56 2e-08
AT4G05220.1 | Symbols: | harpin-induced protein-related / HIN1-... 55 3e-08
AT5G22870.1 | Symbols: | harpin-induced protein-related / HIN1-... 55 3e-08
AT2G35460.1 | Symbols: | harpin-induced family protein / HIN1 f... 53 2e-07
AT5G06320.1 | Symbols: NHL3 | NHL3 | chr5:1931016-1931711 REVERSE 52 4e-07
AT1G61760.1 | Symbols: | harpin-induced protein-related / HIN1-... 52 5e-07
>AT4G26490.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 11 plant
structures; EXPRESSED DURING: 4 anthesis, LP.04 four
leaves visible, F mature embryo stage, petal
differentiation and expansion stage, E expanded
cotyledon stage; CONTAINS InterPro DOMAIN/s:
Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G56050.1); Has 263 Blast hits to 263 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:13380425-13381231 FORWARD
Length = 268
Score = 271 bits (694), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 121/208 (58%), Positives = 165/208 (79%)
Query: 41 NSESKRSRKQPVFIHHPRPRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSPV 100
N RK V + PR RT+ +W A C +FSL+LIFF IATLI++L+I+PR PV
Sbjct: 61 NGLDAEPRKDRVILRQPRSSRTSLWIWCVAGFCFVFSLLLIFFAIATLIVFLAIRPRIPV 120
Query: 101 FDTPNANLNTIYFDSPEYFNGDLTFLANFSNPNQKIDVRFEYAEIELYFYDRLIGIQALQ 160
FD PNANL+TIYFD+PE+FNGDL+ L NF+NPN+KI+V+FE IEL+F++RLI Q +Q
Sbjct: 121 FDIPNANLHTIYFDTPEFFNGDLSMLVNFTNPNKKIEVKFEKLRIELFFFNRLIAAQVVQ 180
Query: 161 PFTQRRRETRLESVHIISSLVYLPHNFAIELQKQVQSNKVIYNIRGTFKVRANLGLLHYS 220
PF Q++ ETRLE + +ISSLV LP N A+EL++Q+++NK+ Y IRGTFKV+A+ G++HYS
Sbjct: 181 PFLQKKHETRLEPIRLISSLVGLPVNHAVELRRQLENNKIEYEIRGTFKVKAHFGMIHYS 240
Query: 221 YWLHGRCEIEMTGPPTGVLVARSCKTKR 248
Y LHGRC+++MTGPPTG+L++R+C TK+
Sbjct: 241 YQLHGRCQLQMTGPPTGILISRNCTTKK 268
>AT5G56050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; CONTAINS InterPro DOMAIN/s: Harpin-induced
1 (InterPro:IPR010847); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G26490.1);
Has 322 Blast hits to 322 proteins in 28 species: Archae
- 0; Bacteria - 8; Metazoa - 10; Fungi - 1; Plants -
299; Viruses - 2; Other Eukaryotes - 2 (source: NCBI
BLink). | chr5:22701167-22702018 REVERSE
Length = 283
Score = 237 bits (604), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 144/191 (75%)
Query: 58 RPRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSPVFDTPNANLNTIYFDSPE 117
R RTNP +W GA LC IFS++LI FGIATLI+YL++KPR+PVFD NA LNTI F+SP
Sbjct: 92 RTSRTNPWIWCGAALCFIFSILLIVFGIATLILYLAVKPRTPVFDISNAKLNTILFESPV 151
Query: 118 YFNGDLTFLANFSNPNQKIDVRFEYAEIELYFYDRLIGIQALQPFTQRRRETRLESVHII 177
YFNGD+ NF+NPN+K++VRFE +EL+F D I Q + PF+QR +TRLE + +I
Sbjct: 152 YFNGDMLLQLNFTNPNKKLNVRFENLMVELWFADTKIATQGVLPFSQRNGKTRLEPIRLI 211
Query: 178 SSLVYLPHNFAIELQKQVQSNKVIYNIRGTFKVRANLGLLHYSYWLHGRCEIEMTGPPTG 237
S+LV+LP N +EL++QV SN++ Y IR F+V+A G++HYSY LHG C+++++ PP G
Sbjct: 212 SNLVFLPVNHILELRRQVTSNRIAYEIRSNFRVKAIFGMIHYSYMLHGICQLQLSSPPAG 271
Query: 238 VLVARSCKTKR 248
LV R+C TKR
Sbjct: 272 GLVYRNCTTKR 282
>AT3G26350.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:
pedicel, root, carpel, stamen; EXPRESSED DURING: 4
anthesis, petal differentiation and expansion stage;
CONTAINS InterPro DOMAIN/s: Harpin-induced 1
(InterPro:IPR010847); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G13050.1); Has 3161
Blast hits to 2320 proteins in 288 species: Archae - 6;
Bacteria - 135; Metazoa - 1071; Fungi - 426; Plants -
961; Viruses - 219; Other Eukaryotes - 343 (source: NCBI
BLink). | chr3:9653660-9654730 REVERSE
Length = 356
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/193 (43%), Positives = 116/193 (60%), Gaps = 1/193 (0%)
Query: 57 PRPRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSPVFDTPNANLNTIYFDSP 116
P R TN + W A C IF ++LI G+ LI+YL +PRSP D ANLN Y D
Sbjct: 164 PPSRETNAMTWSAAFCCAIFWVILILGGLIILIVYLVYRPRSPYVDISAANLNAAYLDMG 223
Query: 117 EYFNGDLTFLANFSNPNQKIDVRFEYAEIELYFYDRLIGIQALQPFTQRRRETRLESVHI 176
NGDLT LAN +NP++K V F Y ELY+Y+ LI Q ++PF ++ + +VH+
Sbjct: 224 FLLNGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYIEPFKVPKKTSMFANVHL 283
Query: 177 ISSLVYLPHNFAIELQKQVQSNKVIYNIRGTFKVRANLG-LLHYSYWLHGRCEIEMTGPP 235
+SS V L + ELQ+Q+++ V+ N+RG F R+++G L YSY LH C + + GPP
Sbjct: 284 VSSQVQLQATQSRELQRQIETGPVLLNLRGMFHARSHIGPLFRYSYKLHTHCSVSLNGPP 343
Query: 236 TGVLVARSCKTKR 248
G + AR C TKR
Sbjct: 344 LGAMRARRCNTKR 356
>AT1G13050.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN:
14 plant structures; EXPRESSED DURING: 9 growth stages;
CONTAINS InterPro DOMAIN/s: Harpin-induced 1
(InterPro:IPR010847); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G26350.1); Has 384
Blast hits to 355 proteins in 83 species: Archae - 0;
Bacteria - 20; Metazoa - 86; Fungi - 33; Plants - 210;
Viruses - 7; Other Eukaryotes - 28 (source: NCBI BLink).
| chr1:4450568-4451521 FORWARD
Length = 317
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 1/191 (0%)
Query: 59 PRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPRSPVFDTPNANLNTIYFDSPEY 118
P+RT P+ I C I +VLI G+ L++YL+ +PRSP FD A LNT D
Sbjct: 127 PKRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYV 186
Query: 119 FNGDLTFLANFSNPNQKIDVRFEYAEIELYFYDRLIGIQALQPFTQRRRETRLESVHIIS 178
NGDL + NF+NP++K V F Y ELYFY+ LI + ++PF + + S H++S
Sbjct: 187 LNGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIATEHIEPFIVPKGMSMFTSFHLVS 246
Query: 179 SLVYLPHNFAIELQKQVQSNKVIYNIRGTFKVRANLG-LLHYSYWLHGRCEIEMTGPPTG 237
S V + + +LQ Q+ + V+ N+RGTF R+NLG L+ YSYWLH +C I + PP G
Sbjct: 247 SQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSISLNTPPAG 306
Query: 238 VLVARSCKTKR 248
+ AR C TKR
Sbjct: 307 TMRARRCNTKR 317
>AT1G13050.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro
DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G26350.1). | chr1:4450964-4451521 FORWARD
Length = 185
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 1/160 (0%)
Query: 90 IYLSIKPRSPVFDTPNANLNTIYFDSPEYFNGDLTFLANFSNPNQKIDVRFEYAEIELYF 149
+YL+ +PRSP FD A LNT D NGDL + NF+NP++K V F Y ELYF
Sbjct: 26 VYLANRPRSPYFDISAATLNTANLDMGYVLNGDLAVVVNFTNPSKKSSVDFSYVMFELYF 85
Query: 150 YDRLIGIQALQPFTQRRRETRLESVHIISSLVYLPHNFAIELQKQVQSNKVIYNIRGTFK 209
Y+ LI + ++PF + + S H++SS V + + +LQ Q+ + V+ N+RGTF
Sbjct: 86 YNTLIATEHIEPFIVPKGMSMFTSFHLVSSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFH 145
Query: 210 VRANLG-LLHYSYWLHGRCEIEMTGPPTGVLVARSCKTKR 248
R+NLG L+ YSYWLH +C I + PP G + AR C TKR
Sbjct: 146 ARSNLGSLMRYSYWLHTQCSISLNTPPAGTMRARRCNTKR 185
>AT5G56070.1 | Symbols: | unknown protein | chr5:22708679-22709204
FORWARD
Length = 119
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 190 ELQKQVQSNKVIYNIRGTFKVRANLGLLHYSYWLHGRCEIEMTGPPTGVLVAR 242
E Q+QV SN + Y I F+V+ +G ++YSYWL G C++++T PP L++R
Sbjct: 45 ENQRQVTSNMIEYEIISRFRVKVVIGYINYSYWLKGSCQLQLTSPPADDLLSR 97
>AT3G11650.1 | Symbols: NHL2 | NHL2 | chr3:3676264-3676986 REVERSE
Length = 240
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 82/192 (42%), Gaps = 14/192 (7%)
Query: 38 LPPNSESKRSRKQPVFIHHPRPRRTNPIVWFG----AILCLIFSLVLIFFGIATLIIYLS 93
+PP ++ RS P F + + G +++C I V + G+A LI++L
Sbjct: 17 IPPPPKAHRSYNSPGFGCCCFSCLGSCLRCCGCCILSLICNILIAVAVILGVAALILWLI 76
Query: 94 IKPRSPVFDTPNANLNTIYFDSPEYFNGDLTFLANFSNPNQKIDVRFEYAEIELYFYDRL 153
+P + F +ANLN FD + L NPNQ++ V ++ + Y+ D+
Sbjct: 77 FRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQR 136
Query: 154 IGIQALQPFTQRRRETRLESVHIIS-SLVYLPHNFAIELQKQVQSNKVIYNIRGTFKVRA 212
G + F Q + T + I +LV L +L+ +S G +++ A
Sbjct: 137 FGSANVSSFYQGHKNTTVILTKIEGQNLVVLGDGARTDLKDDEKS--------GIYRINA 188
Query: 213 NLGL-LHYSYWL 223
L L + + +W
Sbjct: 189 KLRLSVRFKFWF 200
>AT4G05220.1 | Symbols: | harpin-induced protein-related /
HIN1-related / harpin-responsive protein-related |
chr4:2685104-2685784 REVERSE
Length = 226
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 8/195 (4%)
Query: 38 LPPNSESKRSRKQPVFIHHPRPRRTNPIVWFGAILCLIFSLVLIFFGIATLIIYLSIKPR 97
+P KR + H R + I F +C +F LVL F G+ I++LS++P
Sbjct: 15 VPRAQPMKRHHSASYYAHRVRESLSTRISKF---ICAMFLLVLFFVGVIAFILWLSLRPH 71
Query: 98 SPVFDTPNANLNTIYFDSPEYF-NGDLTFLANFSNPNQKIDVRFEYAEIELYFYDRLIG- 155
P F + + + D P N + F NPNQ + V F+ E +Y+ D+ +G
Sbjct: 72 RPRFHIQDFVVQGL--DQPTGVENARIAFNVTILNPNQHMGVYFDSMEGSIYYKDQRVGL 129
Query: 156 IQALQPFTQRRRETRLESVHIISSLVYLPHNFAIELQKQVQSNKVIYNIRGTFKVRANLG 215
I L PF Q+ T + + + + + + N E V + + +R L
Sbjct: 130 IPLLNPFFQQPTNTTIVTGTLTGASLTVNSNRWTEFSNDRAQGTVGFRLDIVSTIRFKLH 189
Query: 216 -LLHYSYWLHGRCEI 229
+ + +H C I
Sbjct: 190 RWISKHHRMHANCNI 204
>AT5G22870.1 | Symbols: | harpin-induced protein-related /
HIN1-related / harpin-responsive protein-related |
chr5:7647056-7647679 REVERSE
Length = 207
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 3/155 (1%)
Query: 70 AILCLIFSLVLIFFGIAT---LIIYLSIKPRSPVFDTPNANLNTIYFDSPEYFNGDLTFL 126
+++C IF ++L +A LI +L KP+ + NA++ + + + F
Sbjct: 24 SLICYIFLVILTLIFMAAVGFLITWLETKPKKLRYTVENASVQNFNLTNDNHMSATFQFT 83
Query: 127 ANFSNPNQKIDVRFEYAEIELYFYDRLIGIQALQPFTQRRRETRLESVHIISSLVYLPHN 186
NPN +I V + EI + F D+ + ++PF Q R + +I+ V + +
Sbjct: 84 IQSHNPNHRISVYYSSVEIFVKFKDQTLAFDTVEPFHQPRMNVKQIDETLIAENVAVSKS 143
Query: 187 FAIELQKQVQSNKVIYNIRGTFKVRANLGLLHYSY 221
+L+ Q K+ + + +VR +G+ S+
Sbjct: 144 NGKDLRSQNSLGKIGFEVFVKARVRFKVGIWKSSH 178
>AT2G35460.1 | Symbols: | harpin-induced family protein / HIN1
family protein / harpin-responsive family protein |
chr2:14905788-14906504 FORWARD
Length = 238
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 4/151 (2%)
Query: 71 ILCLIFSLVLIFFGIATLIIYLSIKPRSPVFDTPNANLNTIYFDSPEYFNGDLTFLANFS 130
I+C I VL+ G+ LI++ ++P F A+L FD P N NFS
Sbjct: 53 IICNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFD-PRSHNLHYNISLNFS 111
Query: 131 --NPNQKIDVRFEYAEIELYFYDRLIGIQALQPFTQRRRETRLESVHIIS-SLVYLPHNF 187
NPNQ++ + ++ E+ Y+ D+ + F Q + T + + LV L
Sbjct: 112 IRNPNQRLGIHYDQLEVRGYYGDQRFSAANMTSFYQGHKNTTVVGTELNGQKLVLLGAGG 171
Query: 188 AIELQKQVQSNKVIYNIRGTFKVRANLGLLH 218
+ ++ +S +++ FK+R G L+
Sbjct: 172 RRDFREDRRSGVYRIDVKLRFKLRFKFGFLN 202
>AT5G06320.1 | Symbols: NHL3 | NHL3 | chr5:1931016-1931711 REVERSE
Length = 231
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 10/173 (5%)
Query: 71 ILCLIFSLVL---IFFGIATLIIYLSIKPRSPVFDTPNANLNTIYFDSPE--YFNGDLTF 125
IL +IF++++ + GIA LII+L +P + F +A L D +N DL F
Sbjct: 44 ILSVIFNILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNNLRYNLDLNF 103
Query: 126 LANFSNPNQKIDVRFEYAEIELYFYDRLIGI-QALQPFTQRRRETRLESVHIIS-SLVYL 183
NPN++I V ++ E+ Y+ D+ G+ + F Q + T + ++ LV L
Sbjct: 104 --TIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLL 161
Query: 184 PHNFAIELQKQVQSNKVIYNIRGTFKVRANLGLLHYSYWLHGRCEIEMTGPPT 236
+L + V S + + K+R GL+ S+ + + ++ P T
Sbjct: 162 DGGERKDLNEDVNSQIYRIDAKLRLKIRFKFGLIK-SWRFKPKIKCDLKVPLT 213
>AT1G61760.1 | Symbols: | harpin-induced protein-related /
HIN1-related / harpin-responsive protein-related |
chr1:22807440-22808114 REVERSE
Length = 224
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 88/181 (48%), Gaps = 8/181 (4%)
Query: 71 ILCLIFSLVLIFFGIATLIIYLSIKPRSPVFDTPNANLNTIYFDSPEYF-NGDLTFLANF 129
++C IF +L+ GI T I+++S++P P +++ + P+ F ++F
Sbjct: 43 LICAIFLSLLLCLGIITFILWISLQPHRPRVHIRGFSISGL--SRPDGFETSHISFKITA 100
Query: 130 SNPNQKIDVRFEYAEIELYFYDRLIGIQAL-QPFTQRRRETRLESVHIISSLVYLPHNFA 188
NPNQ + + ++ E +Y+ ++ IG L PF Q + T + + + +
Sbjct: 101 HNPNQNVGIYYDSMEGSVYYKEKRIGSTKLTNPFYQDPKNTSSIDGALSRPAMAVNKDRW 160
Query: 189 IELQKQVQSNKVIYNIRGTFKVRANLGLLH-YSYWLHGRCEIEMTGPPTGVLVARSCKTK 247
+E+++ K+++ ++ +R + H S+ ++ C IE+ G+L++ + K K
Sbjct: 161 MEMERDRNQGKIMFRLKVRSMIRFKVYTWHSKSHKMYASCYIEIGW--DGMLLS-ATKDK 217
Query: 248 R 248
R
Sbjct: 218 R 218