Jatropha Genome Database

JcCA0316341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316341.10 + phase: 0 /partial
         (138 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE (...   156   4e-39
AT1G55805.1 | Symbols:  | BolA-like family protein | chr1:208589...   131   2e-31
AT5G09830.1 | Symbols:  | BolA-like family protein | chr5:305781...    55   1e-08
AT5G17560.1 | Symbols:  | BolA-like family protein | chr5:578847...    51   2e-07

>AT4G26500.1 | Symbols: EMB1374, CPSUFE, ATSUFE, SUFE1 | CPSUFE
           (CHLOROPLAST SULFUR E); enzyme activator/ transcription
           regulator | chr4:13382456-13383571 REVERSE
          Length = 371

 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/99 (78%), Positives = 86/99 (86%), Gaps = 3/99 (3%)

Query: 40  SEVDNLGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGS---DGETHFNLRVVSK 96
           S V  LGSRG RI+E LE+EL P+ELEVED+SYQHAGHA VRGS   DGETHFNLR+VS 
Sbjct: 273 SNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSD 332

Query: 97  EFEGKSLVKRHRLIYGLLQEELQSGLHALSIVAKTPAEV 135
            F+GKSLVKRHRLIY LLQ+EL+SGLHALSIVAKTPAEV
Sbjct: 333 AFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371


>AT1G55805.1 | Symbols:  | BolA-like family protein |
           chr1:20858956-20859438 REVERSE
          Length = 160

 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 91/118 (77%), Gaps = 9/118 (7%)

Query: 29  VGVDSLSMGMNSEVDNLGS-------RGKRIKEILERELKPIELEVEDISYQHAGHAGVR 81
            G  S S+ M+S V+  GS       R  R++E L++EL+P+EL +ED+SYQHAGHAG++
Sbjct: 43  TGTGSRSVAMSS-VEKTGSDSGAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMK 101

Query: 82  G-SDGETHFNLRVVSKEFEGKSLVKRHRLIYGLLQEELQSGLHALSIVAKTPAEVDAR 138
           G +D ETHFN+++VSK FEG +LVKRHRL+Y LL+EEL +GLHALSIV+KTP+E  ++
Sbjct: 102 GRTDDETHFNVKIVSKGFEGMNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPSK 159


>AT5G09830.1 | Symbols:  | BolA-like family protein |
           chr5:3057816-3058769 REVERSE
          Length = 93

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 13/80 (16%)

Query: 56  LERELKPIELEVEDISYQHAGHAGVRGSDGETHFNLRVVSKEFEGKSLVKRHRLIYGLLQ 115
           L  +LKPI LEV DIS    G  G       + F + VVS++FEGK L++RHR++   L+
Sbjct: 11  LTSKLKPIHLEVIDIS----GGCG-------SSFEVEVVSEQFEGKRLLERHRMVNAALE 59

Query: 116 EELQSGLHALSI-VAKTPAE 134
           EE++  +HALSI  A+TP +
Sbjct: 60  EEMKE-IHALSIKKAQTPQQ 78


>AT5G17560.1 | Symbols:  | BolA-like family protein |
           chr5:5788474-5789671 FORWARD
          Length = 177

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 9/98 (9%)

Query: 39  NSEVDNLGSRGKRIKEILERELKPIELEVEDISYQHAGHAGVRGSDGETHFNLRVVSKEF 98
           +S++++ GS  + + + +E ++K  +L  E ++            DG  H  + VVS  F
Sbjct: 88  SSQINDAGSIDQTLMQSMELKIKE-QLNAESVTVTDMS------GDGR-HVCINVVSSAF 139

Query: 99  EGKSLVKRHRLIYGLLQEELQSGLHAL-SIVAKTPAEV 135
           EG+S V R R++Y  + EELQ+ +HA+  +  KTP+EV
Sbjct: 140 EGQSAVNRQRMVYKAIWEELQNVVHAVDQMTTKTPSEV 177