Jatropha Genome Database

JcCA0316311.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.30 - phase: 0 /pseudo/partial
         (730 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | SYN3 | chr3:219...   166   4e-41
AT4G05360.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    87   5e-17

>AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | SYN3 |
           chr3:21997262-22000496 FORWARD
          Length = 693

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 184/532 (34%), Positives = 241/532 (45%), Gaps = 98/532 (18%)

Query: 206 TGIVDLPSTQTT----VPMDTAEIQDLG---PNNQTELQTGSPDFRDPGPSNQTE--VIN 256
           TG +D+ +   T     P D+    D G   P N TE  T   + +DP  SN TE  + N
Sbjct: 182 TGEIDVETAHETGPDNEPRDSNIAFDTGTYSPRNVTEEFT---EVQDPRQSNLTEERIPN 238

Query: 257 SMLNDDNSP---PEIEIMRDPVQGFSPEKLPSGFPDHQNDAFQPTTSFDQGLNEKEIPSP 313
           S  ND  SP   PEIE MRD     SP   PS     Q+   + T S D+ LNEKE   P
Sbjct: 239 SERNDATSPGTVPEIERMRDAAHDLSPTSHPSFAAQQQDVRVERTESLDETLNEKEPTIP 298

Query: 314 FKEDALPSGGQPSPFQRHSEAPEKFITD----ISFGNRSPELAIRSTXXXXXXXXXXXXX 369
             ++ + + G+ S F+  S +P            F + SP+L ++ +             
Sbjct: 299 SIDEEMLNSGRHSAFELRSGSPGSAAGSEEERADFVHPSPQLVLQPSPPPQPQRRARKRK 358

Query: 370 XHFFDESTVLTNK--------------RRKEIPSTALGIWKLNKNLRREQVLYEPSLTGY 415
              FD  TVLTNK              +RK++PS+ L  W++N   R++Q   EP  TG+
Sbjct: 359 N--FDGVTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRMNNQSRKDQNFNEPLFTGF 416

Query: 416 SANICNLFKRDYIITKSHLTLEREATPEPRVVTSPAPSTEAIAEARDAN----------- 464
           S ++ N+F++DY+ +K HL +  E  PEP  V   +P+ EA  E    +           
Sbjct: 417 SDDLRNVFEKDYVASKPHLAVSDETLPEPASV---SPTREAEVEINPVSPIPDSTNPDST 473

Query: 465 ---SPAPATEVVIEDRDVASPAXXXXXXXXXXVAQSPASEAEPDLEIERLRHHEGQDGNR 521
              SPA  TE V+   D A P            AQSP +    D+ IE LR     DG  
Sbjct: 474 VQLSPAQQTEDVL---DSAGPRPAHAESVATE-AQSPRTFDNDDMGIEHLR-----DGG- 523

Query: 522 LLPDSPARFIPSPGRFVSSPFRRDDFTPNTQKNLGSGSVPWAQTSIETEVMPTPGVSASP 581
             P              SSPFR DDFT  TQ    SG+  W   S  TE          P
Sbjct: 524 -FP-----VYMPSPPPRSSPFRTDDFT--TQ----SGN--WETESYRTE----------P 559

Query: 582 GTCTTEPETPRTFLEDQFDLGHTGLSDIPESIAETEDLYFLE-ADNTPAGSQGTQSIDSL 640
            T T   + P          G   L   P S    E+LYFLE   N+P G+  +Q   +L
Sbjct: 560 STSTVPEDLP----------GQRNLGLSPVSERTDEELYFLEVGGNSPVGTPASQDSAAL 609

Query: 641 SVRSRAVAQYLK-RHSLSTPLSGDQSRDLSLNKILQGKTRKLCARMFFETLV 691
           + R+RA+AQYLK R S S   S   S DLSL++IL GKTRKL ARMFFETLV
Sbjct: 610 TGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEILAGKTRKLAARMFFETLV 661


>AT4G05360.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr4:2728204-2732337 FORWARD
          Length = 735

 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 134/314 (42%), Gaps = 88/314 (28%)

Query: 380 TNKRRKEIPSTALGIWKLNKNLRREQVLYEPSLTGYSANICNLFKRDYIITKSHLTLERE 439
           T ++RK++ S+ LG  +L+   +++Q+  EP  TG+S  + ++FK+D  + KS+      
Sbjct: 88  TVRKRKKLSSSKLGFRRLDNQSKKDQLFNEPLFTGFSNVLLSVFKKD-CVAKSYFA---- 142

Query: 440 ATPEPRVVTSPAPSTEAIAEARDANSPAPATEVVIEDRDVASPAXXXXXXXXXXVAQSPA 499
           A  EP  V   +P+ EA  E    NS +P T+  + D                 V +S  
Sbjct: 143 APKEPASVPVSSPTREAETEI---NSASPVTQSTVPD----------STNQESTVQRSSG 189

Query: 500 SEAEPDLEIERLRHHEGQDGNRLLP--DSPARFIPSPGRFVSSPFRRDDFTPNTQKNLGS 557
            + E         H +G     +LP  +     +  P R  SSPFR + FT         
Sbjct: 190 QQTE---------HFQGVALKFVLPGLNILEYMLSPPPR--SSPFRTNGFT--------- 229

Query: 558 GSVPWAQTSIETEVMPTPGVSASPGTCTTEPETPRTFLEDQFDLGHTGLSDIPESIAETE 617
                    I  E   T       G+  T+P T                         TE
Sbjct: 230 ---------IHPETWET-------GSYRTQPSTSNN----------------------TE 251

Query: 618 DLYFLEAD-NTPAGSQGTQSIDSLSVRSRAVAQYLKRHSLSTPLSGDQSRDLSLNKILQG 676
           +L+FLE   NTP  S  TQ     S R+RA+AQ+LK            S  LSLNKIL+G
Sbjct: 252 ELHFLEEGVNTPVRSPVTQDSGGFSGRTRALAQHLKER---------YSGYLSLNKILEG 302

Query: 677 KTRKLCARMFFETL 690
           KTRK+ ARMF+ETL
Sbjct: 303 KTRKIAARMFYETL 316