Jatropha Genome Database

JcCA0316311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316311.10 - phase: 0 /pseudo
         (254 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01160.1 | Symbols:  | unknown protein | chr3:54655-57449 REV...    70   2e-12

>AT3G01160.1 | Symbols:  | unknown protein | chr3:54655-57449
           REVERSE
          Length = 713

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 41  KVIADPRFVSVHYDPRFQKVSMLKSKVAIDSRFSRMFTDKNFQSSAAPLDKRGKVKKNKT 100
           ++I DPRF S H DP+F+++    SKVAIDSRF  MF DK F + +AP+DKRGK +   T
Sbjct: 29  EMIKDPRFSSAHTDPKFRRMRRRDSKVAIDSRFQPMFNDKRFATGSAPVDKRGKRRTGGT 88