Jatropha Genome Database

JcCA0316161.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316161.20 - phase: 0 
         (204 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42330.1 | Symbols:  | unknown protein | chr5:16926672-169273...   117   6e-27

>AT5G42330.1 | Symbols:  | unknown protein | chr5:16926672-16927370
           FORWARD
          Length = 205

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 119/216 (55%), Gaps = 26/216 (12%)

Query: 1   MKSDRRPPLAKSPIRLRPRRVLQXXXXXVQTP-PGSLTKSQKPNLTREMEESDL----RS 55
           M+S  +PPL KSPIRLR R+VL      +QTP PG L    KP   R + + DL    + 
Sbjct: 4   MRSYLKPPLPKSPIRLRSRQVLHSS---LQTPSPGFL----KPG--RRLSDVDLNPKPQI 54

Query: 56  ENHTMSCELRALARMVQDELGNAXX-XXXXXXXXXXXXXXPLFERGRFYEVYSARRNX-- 112
           +  ++S E+ ALA+MV+DE                     PLFERGRFYE YSA+RN   
Sbjct: 55  KYSSISSEIHALAKMVKDEFAEEEDRKKSSNLESLAKNSVPLFERGRFYEEYSAKRNERL 114

Query: 113 --XXXXXXXXXXXXXXXPYHLGVTVE--SSKKRDSKKLESLRKSVSAAYSVERSANPRYS 168
                            PY+LGV  E  ++K+R + K ES++K+V +   VE S+ PRYS
Sbjct: 115 RRKKGEEAVEGGVVKGTPYNLGVNHEPMTNKRRGTAKKESIKKTVVSM--VESSSIPRYS 172

Query: 169 LRSLSKENKKPPLPFNVEKSVCPSERKVGTRRVRKI 204
           LRS++KEN+KPPLP NV  S   S   V TR+ R+I
Sbjct: 173 LRSMAKENRKPPLPLNVAVSAMKS---VTTRKGRRI 205