Jatropha Genome Database

JcCA0316141.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316141.30 - phase: 1 /partial
         (243 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | CLA1 (CLOROP...   376   e-105
AT3G21500.1 | Symbols: DXPS1 | 1-deoxy-D-xylulose-5-phosphate sy...   310   4e-85
AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose-5-phosphate sy...   310   4e-85
AT5G11380.1 | Symbols: DXPS3 | DXPS3 (1-deoxy-D-xylulose 5-phosp...   287   4e-78
AT5G11380.2 | Symbols: DXPS3 | DXPS3 (1-deoxy-D-xylulose 5-phosp...   122   2e-28
AT5G50850.1 | Symbols: MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruv...    52   3e-07

>AT4G15560.1 | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | CLA1
           (CLOROPLASTOS ALTERADOS 1);
           1-deoxy-D-xylulose-5-phosphate synthase |
           chr4:8884218-8887254 FORWARD
          Length = 717

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/237 (74%), Positives = 202/237 (85%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVDLQKLPVRFA+DRAGLVGADGPTHCGAFD+T+MACLPNM+VMAPSDEA+L +
Sbjct: 480 YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFN 539

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATA AIDDRPSCFR+PRGNGIG ALPP NKG P+EIGKGRIL EG  VA+LGYGS V+
Sbjct: 540 MVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQ 599

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
            C+ AA  L  R ++VTVADARFCKPLD  LIR L + HE+LITVEEGSIGGF SHV  F
Sbjct: 600 SCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 659

Query: 184 LSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEAL 240
           L+L G+LDG LK R MVLPDRYIDHG+P DQ+ EAGL  +HIAAT L+L+G P+EAL
Sbjct: 660 LALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716


>AT3G21500.1 | Symbols: DXPS1 | 1-deoxy-D-xylulose-5-phosphate
           synthase | chr3:7573907-7576594 REVERSE
          Length = 640

 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 168/193 (87%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVDLQKLPVRFA+DRAGL+GADGPTHCGAFD+T+MACLPNM+VMAPSDEAEL +
Sbjct: 437 YDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFN 496

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAAAIDDRPSCFR+ RGNGIG +LPP NKG PL+IG+GRIL +G  VA+LGYGS V+
Sbjct: 497 MVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQ 556

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
           +C+EAA+ L  R + +TVADARFCKPLD  LIR L + HE+LITVEEGSIGGF SHV  F
Sbjct: 557 RCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 616

Query: 184 LSLSGILDGDLKL 196
           L+L G+LDG LK+
Sbjct: 617 LALDGLLDGKLKV 629


>AT3G21500.2 | Symbols: DXPS1 | 1-deoxy-D-xylulose-5-phosphate
           synthase | chr3:7573907-7576594 REVERSE
          Length = 641

 Score =  310 bits (795), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 168/193 (87%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVDLQKLPVRFA+DRAGL+GADGPTHCGAFD+T+MACLPNM+VMAPSDEAEL +
Sbjct: 438 YDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFN 497

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGAALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIVR 123
           MVATAAAIDDRPSCFR+ RGNGIG +LPP NKG PL+IG+GRIL +G  VA+LGYGS V+
Sbjct: 498 MVATAAAIDDRPSCFRYHRGNGIGVSLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQ 557

Query: 124 QCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSHF 183
           +C+EAA+ L  R + +TVADARFCKPLD  LIR L + HE+LITVEEGSIGGF SHV  F
Sbjct: 558 RCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGSIGGFGSHVVQF 617

Query: 184 LSLSGILDGDLKL 196
           L+L G+LDG LK+
Sbjct: 618 LALDGLLDGKLKV 630


>AT5G11380.1 | Symbols: DXPS3 | DXPS3 (1-deoxy-D-xylulose
           5-phosphate synthase 3); 1-deoxy-D-xylulose-5-phosphate
           synthase | chr5:3630172-3633250 FORWARD
          Length = 700

 Score =  287 bits (735), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 138/238 (57%), Positives = 181/238 (76%), Gaps = 3/238 (1%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVD Q+  VRF +  AGLVG+DGP  CGAFDI +M+ LPNM+ MAP+DE ELV+
Sbjct: 461 YDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVN 520

Query: 64  MVATAAAIDDRPSCFRFPRGNGIGA-ALPPNNKGTPLEIGKGRILMEGNSVAILGYGSIV 122
           MVATAA + DRP CFRFPRG+ +    L P   G P+EIG+GR+L+EG  VA+LGYG++V
Sbjct: 521 MVATAAYVTDRPVCFRFPRGSIVNMNYLVPT--GLPIEIGRGRVLVEGQDVALLGYGAMV 578

Query: 123 RQCVEAANKLRTRDISVTVADARFCKPLDTDLIRRLTREHEILITVEEGSIGGFCSHVSH 182
           + C+ A + L    ++VTVADARFCKPLD  L+R L + H+ LITVEEG +GGF SHV+ 
Sbjct: 579 QNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNHKFLITVEEGCVGGFGSHVAQ 638

Query: 183 FLSLSGILDGDLKLRSMVLPDRYIDHGSPQDQIQEAGLSSNHIAATVLSLLGKPKEAL 240
           F++L G LDG++K R +VLPD YI+  SP++Q+  AGL+ +HIAAT LSLLG+ +EAL
Sbjct: 639 FIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLGRTREAL 696


>AT5G11380.2 | Symbols: DXPS3 | DXPS3 (1-deoxy-D-xylulose
           5-phosphate synthase 3); 1-deoxy-D-xylulose-5-phosphate
           synthase | chr5:3630172-3632762 FORWARD
          Length = 565

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 65/81 (80%)

Query: 4   WTKVVHDVDLQKLPVRFALDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVH 63
           + +VVHDVD Q+  VRF +  AGLVG+DGP  CGAFDI +M+ LPNM+ MAP+DE ELV+
Sbjct: 461 YDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVN 520

Query: 64  MVATAAAIDDRPSCFRFPRGN 84
           MVATAA + DRP CFRFPRG+
Sbjct: 521 MVATAAYVTDRPVCFRFPRGS 541


>AT5G50850.1 | Symbols: MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate
           dehydrogenase (acetyl-transferring) |
           chr5:20689671-20692976 FORWARD
          Length = 363

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 26  GLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELVHMVATAAAIDDRPSCFRFPRGNG 85
           G     G  H   +   Y A +P + V+AP   AE    +  AA  D  P  F       
Sbjct: 152 GAAAGVGAQHSQCYAAWY-ASVPGLKVLAPYS-AEDARGLLKAAIRDPDPVVF-LENELL 208

Query: 86  IGAALPPNNKGTP----LEIGKGRILMEGNSVAILGYGSIVRQCVEAANKLRTRDISVTV 141
            G + P + +       L IGK +I  EG  V I+ +  +V   ++AA KL    IS  V
Sbjct: 209 YGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEV 268

Query: 142 ADARFCKPLDTDLIRRLTREHEILITVEEG-SIGGFCSHV 180
            + R  +PLD   I    R+   L+TVEEG    G C+ +
Sbjct: 269 INLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEI 308