Jatropha Genome Database

JcCA0316141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316141.10 + phase: 0 /pseudo/partial
         (651 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding...    83   7e-16
AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding...    83   7e-16
AT2G22600.1 | Symbols:  | KH domain-containing protein | chr2:95...    78   2e-14
AT5G09560.1 | Symbols:  | KH domain-containing protein | chr5:29...    70   3e-12
AT1G51580.1 | Symbols:  | KH domain-containing protein | chr1:19...    67   4e-11
AT5G46190.1 | Symbols:  | KH domain-containing protein | chr5:18...    64   4e-10
AT4G18375.2 | Symbols:  | KH domain-containing protein | chr4:10...    57   6e-08
AT5G53060.1 | Symbols:  | KH domain-containing protein | chr5:21...    56   6e-08
AT5G15270.1 | Symbols:  | KH domain-containing protein | chr5:49...    51   2e-06
AT5G15270.2 | Symbols:  | KH domain-containing protein | chr5:49...    51   2e-06

>AT5G64390.2 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding /
           nucleic acid binding | chr5:25743442-25746742 FORWARD
          Length = 824

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 58/79 (73%)

Query: 303 TSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGE 362
           +S+TARL+V +  + C+ G GG I S+  + +GA IQIL+ EQN  C SEND V++ITGE
Sbjct: 540 SSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGE 599

Query: 363 YKNVQNALFLVTRKLRDTL 381
           + NV+ A+F +T +LRD++
Sbjct: 600 FPNVREAIFHITSRLRDSV 618


>AT5G64390.1 | Symbols: HEN4 | HEN4 (HUA ENHANCER 4); RNA binding /
           nucleic acid binding | chr5:25743442-25747380 FORWARD
          Length = 857

 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 58/79 (73%)

Query: 303 TSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGE 362
           +S+TARL+V +  + C+ G GG I S+  + +GA IQIL+ EQN  C SEND V++ITGE
Sbjct: 540 SSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGE 599

Query: 363 YKNVQNALFLVTRKLRDTL 381
           + NV+ A+F +T +LRD++
Sbjct: 600 FPNVREAIFHITSRLRDSV 618



 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 55/76 (72%)

Query: 573 KRSNVANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGT 632
           K + V N+ VE+ V  + +  V+GE G NL +LRQISGA+V + +P  G +DR +VISGT
Sbjct: 769 KSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIVISGT 828

Query: 633 PDQTRAAQSLFQAFIL 648
           PDQT+AAQ+L  AFIL
Sbjct: 829 PDQTQAAQNLLHAFIL 844


>AT2G22600.1 | Symbols:  | KH domain-containing protein |
           chr2:9596617-9599050 FORWARD
          Length = 632

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 3/112 (2%)

Query: 285 RSIEHEIEKGHPSVLIEGTSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGE 344
           RS+E ++EKG    L  G  V  +LLV S      NGNG   + +    +GAD+ I  G 
Sbjct: 349 RSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNG---NREAIIATGADVHISVGN 405

Query: 345 QNSDCASENDVVIEITGEYKNVQNALFLVTRKLRDTLVPSELLDEAKLRSPN 396
           Q  +  SEN+VVIEI GEY +VQ AL  V+ KLR+ L+P ++L E + R  N
Sbjct: 406 QVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGEMRARVSN 457



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 2/66 (3%)

Query: 582 VELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTRAAQS 641
           +EL V +D +GS++G DG  +  L+QISGA V+V DP+    + TV+ISG P+Q R A S
Sbjct: 566 LELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPT--GTEATVLISGNPEQARTAMS 623

Query: 642 LFQAFI 647
           L ++ +
Sbjct: 624 LIESIL 629


>AT5G09560.1 | Symbols:  | KH domain-containing protein |
           chr5:2967170-2969209 FORWARD
          Length = 563

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 292 EKGHPSVLIEG--TSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDC 349
           E     VL  G  +S+TARL+V S+ + CL G  G I +   + +GA I +L  EQN  C
Sbjct: 379 ENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKC 438

Query: 350 ASENDVVIEITGEYKNVQNALFLVTRKLRDTLV 382
            SEN+ V++I+GE+ NV+ A+  VT  LR+ L+
Sbjct: 439 VSENNQVVQISGEFPNVREAINQVTSMLREDLI 471


>AT1G51580.1 | Symbols:  | KH domain-containing protein |
           chr1:19125612-19128102 FORWARD
          Length = 621

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 45/70 (64%)

Query: 582 VELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTRAAQS 641
           VE+++ +  +G V+GE+  NL  ++Q+SGA V V DP  G  +  VV+SGT DQ   AQS
Sbjct: 551 VEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQS 610

Query: 642 LFQAFILAYQ 651
           L  AFIL  Q
Sbjct: 611 LLHAFILCGQ 620



 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%)

Query: 303 TSVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGE 362
            +V ARLLV S  +  L G GG + S+    +GA I++   +Q +   S++D ++++ G 
Sbjct: 358 AAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGN 417

Query: 363 YKNVQNALFLVTRKLRDTLVPSEL 386
            K VQ+ALF +  +LR+ + P  L
Sbjct: 418 LKTVQDALFQILCRLREAMFPGRL 441



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 308 RLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYKNVQ 367
           R++V  + V  L   GG++  K  E SGA ++I   +Q   CA   DVVI++ G++ +V+
Sbjct: 151 RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVK 210

Query: 368 NALFLVTRKLRDTLVPSELLDEAKLRSP 395
            AL LVT  L+++  P    DE     P
Sbjct: 211 KALLLVTNCLQESGAPP-TWDECPFPQP 237


>AT5G46190.1 | Symbols:  | KH domain-containing protein |
           chr5:18723435-18725834 REVERSE
          Length = 644

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 46/71 (64%)

Query: 579 NSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTRA 638
           ++ +E+ +  + +G V G  GGNL  +R+ISGA +E+ D       R  +ISGT +Q R 
Sbjct: 573 STTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRT 632

Query: 639 AQSLFQAFILA 649
           A++LFQAFI++
Sbjct: 633 AENLFQAFIMS 643



 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%)

Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
           V  +LLV S V+ C+ G  G I S+  + + ADI I +G     CA  ND ++EI+GE  
Sbjct: 399 VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVS 458

Query: 365 NVQNALFLVTRKLRDTLV 382
           NV++AL  +  +LRD ++
Sbjct: 459 NVRDALIQIVLRLRDDVL 476


>AT4G18375.2 | Symbols:  | KH domain-containing protein |
           chr4:10152825-10155125 FORWARD
          Length = 606

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 578 ANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQTR 637
           ++S +E+L+    +  V G+ GGNL  +R+ISGA +E+        D   ++SGT +Q R
Sbjct: 534 SSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMR 593

Query: 638 AAQSLFQAFILA 649
            A++L QAF+++
Sbjct: 594 CAENLVQAFVMS 605


>AT5G53060.1 | Symbols:  | KH domain-containing protein |
           chr5:21515355-21518197 FORWARD
          Length = 652

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
           +T RLLV S    CL G  G + S+ +  +G  +QIL  E+   CAS NDVVI+ITGE +
Sbjct: 409 ITTRLLVPSRDSICLEGKAGSV-SEISRLTGTSVQILAREEIPRCASINDVVIQITGEIR 467

Query: 365 NVQNALFLVTRKLR 378
             + AL  +T  LR
Sbjct: 468 AAREALVELTLLLR 481



 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 577 VANSVVELLVSEDIIGSVFGEDGGNLTRLRQISGAKVEVCDPSPGKNDRTVVISGTPDQT 636
           V  S +E+++ E ++  +  +    L ++ + SGA V + +  P +    + ISGTP+Q 
Sbjct: 574 VTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQA 633

Query: 637 RAAQSLFQAFILAYQ 651
             AQSL Q FIL+ Q
Sbjct: 634 ERAQSLLQGFILSIQ 648


>AT5G15270.1 | Symbols:  | KH domain-containing protein |
           chr5:4958738-4960947 FORWARD
          Length = 548

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%)

Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
           VTA+LLV SD + C+ G GG+I       +GA I+I++      CA  +D +I+I+GE  
Sbjct: 147 VTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVL 206

Query: 365 NVQNALFLVTRKL 377
            V+ AL  +  +L
Sbjct: 207 IVKKALLQIASRL 219



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 304 SVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEY 363
           S T RLLV S  + C+ G GG I ++    + A+I+IL  E     AS++D +++I+GE 
Sbjct: 369 SFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGEL 428

Query: 364 KNVQNALFLVTRKLR 378
              + AL  +T +LR
Sbjct: 429 DVAKEALIQITSRLR 443


>AT5G15270.2 | Symbols:  | KH domain-containing protein |
           chr5:4958738-4960947 FORWARD
          Length = 548

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%)

Query: 305 VTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEYK 364
           VTA+LLV SD + C+ G GG+I       +GA I+I++      CA  +D +I+I+GE  
Sbjct: 147 VTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVL 206

Query: 365 NVQNALFLVTRKL 377
            V+ AL  +  +L
Sbjct: 207 IVKKALLQIASRL 219



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 304 SVTARLLVESDVVCCLNGNGGEIDSKFTEGSGADIQILEGEQNSDCASENDVVIEITGEY 363
           S T RLLV S  + C+ G GG I ++    + A+I+IL  E     AS++D +++I+GE 
Sbjct: 369 SFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGEL 428

Query: 364 KNVQNALFLVTRKLR 378
              + AL  +T +LR
Sbjct: 429 DVAKEALIQITSRLR 443