Jatropha Genome Database

JcCA0316031.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0316031.10 - phase: 0 
         (165 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24020.1 | Symbols: MLP423 | MLP423 (MLP-LIKE PROTEIN 423) | ...    52   1e-07
AT5G45860.1 | Symbols:  | Bet v I allergen family protein | chr5...    50   6e-07
AT5G45870.1 | Symbols:  | Bet v I allergen family protein | chr5...    46   8e-06

>AT1G24020.1 | Symbols: MLP423 | MLP423 (MLP-LIKE PROTEIN 423) |
          chr1:8500653-8501458 REVERSE
          Length = 155

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 16 PAKLFKMIVLEPQIYLPKVLPGAIKSFVNLQGDG-GPGTLRQITFPEGSPISHLK-ETVD 73
          PA+ F + + +     PK  P   K+   L GDG  PG++R IT+ EGSP+  +  E ++
Sbjct: 16 PAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYGEGSPLVKISAERIE 75

Query: 74 AIDEENFIFEYSIIGGD 90
          A+D EN    YSIIGG+
Sbjct: 76 AVDLENKSMSYSIIGGE 92


>AT5G45860.1 | Symbols:  | Bet v I allergen family protein |
          chr5:18604101-18604586 REVERSE
          Length = 161

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 36 PGAIKSFV---NLQ-GDGGPGTLRQITFPEGSPISHLKETVDAIDEENFIFEYSIIGGDP 91
          P A K FV   NL  GDGG G++R++T   G P    +E +D +D+E+ +   SIIGGD 
Sbjct: 35 PQAYKQFVKTCNLSSGDGGEGSVREVTVVSGLPAEFSRERLDELDDESHVMMISIIGGDH 94

Query: 92 AIID 95
           +++
Sbjct: 95 RLVN 98


>AT5G45870.1 | Symbols:  | Bet v I allergen family protein |
          chr5:18606564-18607043 REVERSE
          Length = 159

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 32 PKVLPGAIKSFVNLQGDGGPGTLRQITFPEGSPISHLKETVDAIDEENFIFEYSIIGGDP 91
          PK     +K+     GDGG G++R++T     P S   E +D +D+E+ +   SIIGGD 
Sbjct: 35 PKTFKHFVKTCKLRSGDGGEGSVREVTVVSDLPASFSLERLDELDDESHVMVISIIGGDH 94

Query: 92 AIID 95
           +++
Sbjct: 95 RLVN 98