Jatropha Genome Database
- JcCA0315891.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0315891.10 - phase: 0 /partial
(145 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 115 9e-27
AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 114 1e-26
AT5G64320.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 6e-07
AT5G16420.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 49 8e-07
AT2G27800.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Pentatrico... 49 9e-07
AT1G71060.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 48 2e-06
>AT4G01400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167),
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: pentatricopeptide
(PPR) repeat-containing protein (TAIR:AT5G46100.1); Has
11639 Blast hits to 3936 proteins in 180 species: Archae
- 0; Bacteria - 2; Metazoa - 206; Fungi - 141; Plants -
11004; Viruses - 0; Other Eukaryotes - 286 (source: NCBI
BLink). | chr4:573098-577243 REVERSE
Length = 1110
Score = 115 bits (288), Expect = 9e-27, Method: Composition-based stats.
Identities = 55/81 (67%), Positives = 67/81 (82%)
Query: 65 KSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLID 124
KS IGSP RVQKLIASQSD LLAKEIFDYAS+QPNFRHS SS+L+LILKLGR +YF+LID
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLID 104
Query: 125 EILIDLKSKHYVVKSNVFSYI 145
++L +S Y + +F+Y+
Sbjct: 105 DVLAKHRSSGYPLTGEIFTYL 125
>AT4G01400.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Pentatricopeptide repeat
(InterPro:IPR002885); BEST Arabidopsis thaliana protein
match is: pentatricopeptide (PPR) repeat-containing
protein (TAIR:AT5G46100.1). | chr4:575843-577243 REVERSE
Length = 466
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/81 (67%), Positives = 67/81 (82%)
Query: 65 KSLIGSPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLID 124
KS IGSP RVQKLIASQSD LLAKEIFDYAS+QPNFRHS SS+L+LILKLGR +YF+LID
Sbjct: 45 KSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLID 104
Query: 125 EILIDLKSKHYVVKSNVFSYI 145
++L +S Y + +F+Y+
Sbjct: 105 DVLAKHRSSGYPLTGEIFTYL 125
>AT5G64320.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:25723247-25725439 REVERSE
Length = 730
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 70 SPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLIDEILID 129
+P ++ KL+ + + E+F + Q +RHS+ Y VLI KLG + F ID +LI
Sbjct: 77 TPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQ 136
Query: 130 LKSKHYVVKSNVF 142
+K + V K ++F
Sbjct: 137 MKDEGIVFKESLF 149
>AT5G16420.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:5368034-5369641 FORWARD
Length = 535
Score = 49.3 bits (116), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 71 PARVQKLIASQSDALLAKEIFDYASR-QPNFRHSYSSYLVLILKLGRSKYFSLIDEILID 129
P R+ +I Q + LA +IF YA + P F H+Y +Y ++ KL R++ F ++ ++ D
Sbjct: 49 PKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMAD 108
Query: 130 LKSKHYVVK--SNVF 142
L++ + +K N+F
Sbjct: 109 LRNSYPPIKCGENLF 123
>AT2G27800.1 | Symbols: | CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G27300.1); Has 11283 Blast hits to 3897
proteins in 129 species: Archae - 1; Bacteria - 2;
Metazoa - 118; Fungi - 74; Plants - 10832; Viruses - 0;
Other Eukaryotes - 256 (source: NCBI BLink). |
chr2:11849789-11851351 REVERSE
Length = 442
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 70 SPARVQKLIASQSDALLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLIDEILID 129
+P + I + D L +F++AS+QP F H SY + I KLG +K + +D+I+
Sbjct: 138 TPEELADAITLEEDPFLCFHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQ 197
Query: 130 LKSKHYVVKSNVFSYI 145
+ S ++ N+++ I
Sbjct: 198 VLSVRHIGNENLYNSI 213
>AT1G71060.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:26805651-26807183 REVERSE
Length = 510
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 70 SPARVQKLIASQSDA-LLAKEIFDYASRQPNFRHSYSSYLVLILKLGRSKYFSLIDEILI 128
SPA +++++ S+A +LA +F +A Q F+H+ S+Y LI LG+ K F LI ++
Sbjct: 93 SPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVD 152
Query: 129 DLKSKHYVVK 138
D+K+K + K
Sbjct: 153 DMKAKKLLSK 162