Jatropha Genome Database

JcCA0315371.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0315371.20 - phase: 0 /partial
         (175 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24970.1 | Symbols:  | ABC1 family protein | chr5:8604358-860...   162   1e-40

>AT5G24970.1 | Symbols:  | ABC1 family protein |
           chr5:8604358-8608663 REVERSE
          Length = 719

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 119/164 (72%), Gaps = 8/164 (4%)

Query: 1   VAAISEQASESTGEAAKSEENPSDTLEWKSFDIRAVVSATEDLLLFILSEKGSRVRVFLV 60
           VAAISEQAS ++G++ + ++    + E KSFD+ +VVSATEDLLLFILSEKG RVRVFL+
Sbjct: 559 VAAISEQASATSGDSPE-DKTLKKSSELKSFDMHSVVSATEDLLLFILSEKGQRVRVFLL 617

Query: 61  RDIIKVADVFLRDKIVGCILDQKREGNEASKSEGHSTFMRVVNGFQYLRQAVKLAPELWT 120
           +DII+V D+FL  +     L+  +  N  ++ EG  T  RV NGF+ L +AVKLAP +W 
Sbjct: 618 QDIIRVVDIFLEVEA----LELNKTINLKTE-EG--TMKRVSNGFKGLSEAVKLAPGMWI 670

Query: 121 AMLIRMALKPEFHSFILDIMSALVVHFNHKVPETSWVFMSRLLH 164
           +ML+RM+ K E HS+ LDI+SAL  HF HKVP T W+ +S+LLH
Sbjct: 671 SMLLRMSRKSEVHSYALDIVSALSTHFGHKVPHTCWILLSKLLH 714